barSeed - Barley Seed Development Database

Probe CUST_2737_PI390587928

Source Contig U35_9189

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2737_PI390587928	Hv_44K_v2	GTATCATTCAACTTTTCTGACTAAAACCTGAGATGGGCGTATTCATGTGAGCGGCCGCTA	561	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.982	2.534	1.196	0.702	0.254	0.347
Raw	2977.830	3949.480	1643.373	1553.647	192.089	290.429

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_9189	852	3e-25	562 - 621	100	60 / 60	plus

Contig Sequence (852 bp)

>U35_9189 852 Hv_44K_v2
ATCCCTGAATCCTCCGGTATTGGTCTTTGTCCAAAGCAAAGAGAGGGCAAAAGAGCTCTA
CAGAGAGCTGGTATATGATGACATTAGAGTTGATGTAATTCATGGTGACCTTACTGAAGA
ACAGCGTCAAGATGCTGTTGACAACTTGAGAGCTGGAAAAAGCTGGGTGCTAATAGCAAC
AGAGGTTCTTGCGCGGGGAATGGATTTCAAAGGTGTCAACTGTGTAATCAACTACGATTT
CCCTGAGTCCGCGTCTGCCTACATTCACAGAATAGGACGGACTGGAAGAGCAGGCAGGTC
GGGGGAGGCAATCACGTTCTTCACGGAGGAGGACAAGCCGTTCCTGCGGAATATTGCCAA
CGTGCTGGTATCTTCGGGCTGCGAGGTCCCTTCCTGGATGGTGGCATTGCCCAAGCTCAG
GAGCAGGAAGCACAGGGTGGACAGGGACCGCATCTCCTTTTTAACCGACGAGGATTGAGA
GAGTGATATTGTGTAACCGTAACAATTTTGTAGAGATGACACGTTTGGCCTCAGTTTTCC
CTGTTTGAATGCCTGGTGAGTGTATCATTCAACTTTTCTGACTAAAACCTGAGATGGGCG
TATTCATGTGAGCGGCCGCTACTTGGCATGCTTTTCTGCATGTGCACATGTTTTGATGTG
CTGAGACACTCATCACCTTGAGTGATCGATCCTTCAGTCGTTCGCTTAGACCTAGCCCTC
CGTTCTGTGCAGAAACTCATGCGAATTGCACACCATTTTCATTATCAATGCTTGCGTCAT
GGCAGCGGGCAAGCCAATCAGTTGTAGCTTGATGCTCAAAGAGCTCATCTGGTCTGAATG
TTTTCCCGTGTA

Homology of Contig U35_9189 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g45360.1	541	3e-91	protein\|DEAD/DEAH box helicase domain containing protein, expressed
Brachypodium v1_2	Bradi1g19500.1	534	5e-98
Arabidopsis v10	AT3G09720.1	541	4e-72	P-loop containing nucleoside triphosphate hydrolases superfamily protein \| chr3:2980483-2983268 REVERSE LENGTH=541