barSeed - Barley Seed Development Database

Probe CUST_27368_PI390587928

Source Contig U35_11827

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27368_PI390587928	Hv_44K_v2	ACTTACCAATATGGAGTGAAATGCAAAAGCCAGCGCAACAGTGATGGACATCTTAAAAAA	488	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_72217.1	2046	2e-23	274 - 331	100	58 / 58	minus	ABC14249
MLOC	MLOC_72217.2	1663	2e-23	5 - 62	100	58 / 58	minus	ABC14249
JLOC1	JLOC1_48036.1	1840	1e-23	1616 - 1673	100	58 / 58	plus
Harvest35	U35_11827	557	3e-25	489 - 548	100	60 / 60	plus

Contig Sequence (557 bp)

>U35_11827 557 Hv_44K_v2
GAGGGCTTCACAAGGGTCTATGACAACGAGGCGAACCCGTGCGGGCCGGTGCACATCACA
ATCGGCGACGGCGGGAACAGAGAAGGGCTTGCATTCGATTTTCAGAAGAATCATAAGTTG
GCTCGGCTCTCGTTGATGAGGGAGGCGAGCTTTGGGCATGGCCGGCTGAGCGTGGTGAAC
GCGACCGCGGCGCGCTGGGCATGGCACCGCAACGACGACGCTGACTCCATCGTCCGCGAC
GAGCTCTGGCTGGAGAGCCTGGCCGCCAACGGCGCGTGCCGGCGGACCCAACCCTTCCCT
GGTTCTTGGAGCGATGAATTGTAGGCTTGCTACATTGTCAGGTTTACGGGCCCTAACTTC
TGTTCTCAAGATCTTCCAATTCGGGGATGCGCAGAAGCGAGGACGCGCGTGGCTGTTTTG
ACGTAGACCGAAGCATGCGTGGTAAAATATCTCACAAGGAAGCAGAAGTAGTTTTCTTTA
TCTTGTATACTTACCAATATGGAGTGAAATGCAAAAGCCAGCGCAACAGTGATGGACATC
TTAAAAAAAAAAAAAAA

Homology of Contig U35_11827 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g33530.1	453	9e-56	protein\|Ser/Thr protein phosphatase family protein, putative, expressed
Brachypodium v1_2	Bradi5g09247.1	448	1e-60
Arabidopsis v10	None