barSeed - Barley Seed Development Database

Probe CUST_27364_PI390587928

Source Contig U35_23801

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27364_PI390587928	Hv_44K_v2	AGAAGGCAAACAAAGGCATTACAACCATGCTTCTTTCCGGGGGAAATCCCATACATCATG	553	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.929	3.941	2.157	0.781	0.067	0.059
Raw	202.927	685.763	306.220	179.164	3.842	3.196

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_59430.1	877	2e-24	264 - 323	100	60 / 60	minus	None
JLOC1	JLOC1_38677.1	869	8e-25	259 - 318	100	60 / 60	minus
Harvest21	ABC20544	692	3e-25	554 - 613	100	60 / 60	plus
Harvest35	U35_23801	692	3e-25	554 - 613	100	60 / 60	plus

Contig Sequence (692 bp)

>U35_23801 692 Hv_44K_v2
TTCTATGCCCTGCCCATGAGGTAACAACAACCAAACGACCATATGTCGATCGTCCTCTTT
CTCCTCCCATTGATGCTTTCTTCCATGGTGTTGGCGCGACACTTTTTTGATGACCCACCA
ATCATCAACACTCCGCCACCACCGCCATCGAGCGAATGCATTTTTCCGATTCCAGGTCCA
GAGTTCCCAAACTACAACCCATGTGCAAAACAGCCACCTCCGCCATCGCCTTTCGATGAC
CCTTCGATCATCAACTCCCCGGCGTTGCCTCCGCCTTCGCTGTTTGATGATCCATCAATC
ATCAACTCACCACCGCCCCCTTCACTTTTCCATGACCCAATAATCATCAACTCCCTACCA
TCACCCCCTCCATCGCCTTTCGATGACCCACCTATCAACAACTCGCAACCACCACCACCA
ACATCGTCTTTTGATGAACCATCGATCATCAACTCCCCACCGCCTCCTCCATCAAGCGAG
TGTTATTTCCTAATTCCAGGTACAGGGTTGCCAAGCCATAACCCATGTCCAACATCGCCT
CCTATGTCTACCAAGAAGGCAAACAAAGGCATTACAACCATGCTTCTTTCCGGGGGAAAT
CCCATACATCATGGCGTCCATGCTCCACAACCGCACCACTCGCGGCATCGCCATCATACT
CCGCCGCTGGCACCTTCTCATGGTTCATGATG

Homology of Contig U35_23801 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None