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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_27360_PI390587928Hv_44K_v2TCTGGGTTGTGAGGCTGTCTTCCGGCAAGTTAGTTTTGGCTGTATCTGCTTAGATTGAAT599GeneList: blue
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 1.5351.4941.1400.8030.4000.416
Raw 1184.4271808.8861215.2811310.574237.965264.334



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_27318.129167e-232015 - 20759860 / 61plus ABC21023
MLOCMLOC_27317.225607e-232000 - 20609860 / 61plus ABC21023
MLOCMLOC_27317.321047e-231831 - 18919860 / 61plus ABC21023
MLOCMLOC_27317.111237e-23850 - 9109860 / 61plus ABC21023
JLOC1JLOC1_18457.317054e-231571 - 16319860 / 61plus
JLOC1JLOC1_18457.28544e-23720 - 7809860 / 61plus
JLOC1JLOC1_18457.19854e-23851 - 9119860 / 61plus
Harvest21ABC210236593e-251 - 6010060 / 60minusABC21023
Harvest35U35_238056593e-25600 - 65910060 / 60plus



Contig Sequence (659 bp)

>U35_23805 659 Hv_44K_v2
GACGCCATTGCCATGTCAGATTTTCTCGTCCCGATACTTGATTTCGTTCCTGAGAAGCGT
CCTACAGCTGCCCAGTTGCTTCAGCACCCATGGTTTGATGCTGGACCCCTTCGACGGCAG
CCCAGAGCGCTGGCGGACACGGAGAATGATGGTATTCCAGAGAACAAAGGCAAGGAGAAT
GGTGATGAAAGAGATGCAATGGCTGCGGAGCTGGGTAACATCGCCATAGATGGTGCTTCT
TCATCCAAGACAGTGAAGGATCCCCAAGCAAGTTCCAAGCAAAAGAATGGAAACGGTACG
CCTTCTAAGAGGTGAGGTGCCGCCATTCGGTCTACAAGACTCGGTTTTCGGTTCAGATTG
CTCCATGAGTGGGAAAAATGAGTGTTCGTTAGGTTTGTGATGTGCTAGGATATCTACCCA
TGCGAAAAAGAGTAGCAGGCCAGACATATGTTGTATGAGGTTGGTCGAACAGAATTAGAT
TTGTTGGGGTTGATGCGGCTCCTGACCTTTTTCCCCCGGACATATTCTTTTGTACAATCA
GAGCTCCATTTTTTTCAAAGTTGTTTCTTAGTTTTATGCGTGAACCACGTGAAAGGAGCT
CTGGGTTGTGAGGCTGTCTTCCGGCAAGTTAGTTTTGGCTGTATCTGCTTAGATTGAAT



Homology of Contig U35_23805 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None