barSeed - Barley Seed Development Database

Probe CUST_27357_PI390587928

Source Contig U35_23808

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27357_PI390587928	Hv_44K_v2	AATTGTTTGAATTTCTCCTGGGCAACATCAACATGGTTGCTTGGAACTGTATGTTTGAAA	726	GeneList: orange MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.594	0.946	3.047	2.721	1.389	0.792
Raw	3.529	11.149	35.568	50.943	7.885	4.619

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_37192.1	2888	6e-21	2836 - 2888	100	53 / 53	plus
Harvest21	ABC20270	800	3e-25	727 - 786	100	60 / 60	plus	ABC20270
Harvest35	U35_23808	800	3e-25	727 - 786	100	60 / 60	plus

Contig Sequence (800 bp)

>U35_23808 800 Hv_44K_v2
GCAGGTGATACCCAAGATGTCACACGTCTCGTGCCCGCCGAGGTCCCGCCCCGGCGACCT
CAACTACCCGTCCTTCTCGGTCGTGTTCAGGAAGAAGGCGAGGCACGCCGTGAGGTACAG
GAGGGAGCTCACCAACGTCGGCCCGGCAATGGCCGTCTACGACGTGAAGGTGAGCGGCCC
TGCGTCCGTCGGCGTCACGGTGACGCCGGCGAAGCTCGTGTTCAAGAAGGTGGGGCAGAA
GCAGAGGTACTATGTCACCTTCGAATCCAAGGCCGCCGGCGCGGGCCGCGCCAAGCCGGA
CTTCGGGTGGATATCATGGGTGAGTGACGAGCATGTCGTCCGCAGCCCGGTCGCCTACAC
ATGGAAGATGTGAGGGCAGTTATGCTCAGGTTCAGGAGAAGATGAAAGATAGCTAGATAG
CTTGATGTAGTTTGCTGGTCGCTTTGCAAAGAGAATCTGCGCGAAGCTCTGAAGTGCAAA
CCTTGAGTTCTTCCTCGGTGCCGGTCGGTCGCTCGCCGGACTTTGTTTCCCCTTACGGTT
GTTAGTTGTTACTTGCCCGGCGACAAGATTGTGCGCCGTTAACGTGTGAGGTTTGAGTTT
CATTTTTCTTCTTTCTTTCTACGTTCTATGCTTGCAAGCGAGAAATAACCCTGAACTGAA
GTGGCTCAGCCGTTTGATCCCAATTTGTCATCCTGGTGCTCCTGAATTGATGCAAAATGA
TGAAAAAATTGTTTGAATTTCTCCTGGGCAACATCAACATGGTTGCTTGGAACTGTATGT
TTGAAAAAAAAAAAAAAAAA

Homology of Contig U35_23808 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g25450.1	774	3e-56	protein\|OsSub60 - Putative Subtilisin homologue, expressed
Brachypodium v1_2	Bradi4g41420.1	770	5e-58
Arabidopsis v10	None