barSeed - Barley Seed Development Database

Probe CUST_27350_PI390587928

Source Contig U35_11836

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27350_PI390587928	Hv_44K_v2	GTGCACATACTGTATTGCAGGGGGCACAGTCGACCAATTAATCATCTGTAAATTATTCAC	486	GeneList: lightgreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.935	1.272	0.779	0.837	0.697	1.751
Raw	51.570	103.277	60.541	104.280	28.664	81.892

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK250566.1	979	2e-24	768 - 827	100	60 / 60	plus	ABC17012 ABC35360
JLOC1	JLOC1_4667.2	1109	4e-23	874 - 933	98	59 / 60	plus
JLOC1	JLOC1_4667.1	1015	4e-23	780 - 839	98	59 / 60	plus
Harvest21	ABC35360	583	3e-25	487 - 546	100	60 / 60	plus	ABC35360
Harvest21	ABC17012	839	3e-25	729 - 788	100	60 / 60	plus	ABC17012
Harvest35	U35_11836	583	3e-25	487 - 546	100	60 / 60	plus
Harvest35	U35_6809	864	3e-25	729 - 788	100	60 / 60	plus

Contig Sequence (583 bp)

>U35_11836 583 Hv_44K_v2
GGGCTGCAGGATCCTGCTGGTGTGGCATCTCATCGCCGTGGTGACCATCGAGGCCGCGGA
GCACTGCGCGTTCAGCCTCCTCACGGTGATTGACCCACATTCGTCGGCACGCTTCCATCT
GAAAAGAAGAAAACAGAGTGAACTAACCGTAACAGAGCGATCACATGACGATGAAACTAA
CAGCCGAGGGGTGTTGCTTTGCATTGCAGATGTACCTTCTTCGGGCCACGGGGATCTTGC
TGCCGCTCTACGCCGTCATGAGGGTGGTCCGAATGATCCAGCACGGGCGGCGCCAGTACC
AGTTGCAACAGCTGCTGGAGGTCAGTCATGGCTCCTGACTTCTTCCCTGTCGTTCAGGAA
CATGACGGTTGACTGACATGCTCATATATCTTCTTTATTCCTCTGCTTCTGCAGGAGCAA
AGAAGGAATGCATCCAGGCGTAGCCAGGAGGAGCAGCAACAGCTTGTAATTAGTATTCGC
TGAGTAGTGCACATACTGTATTGCAGGGGGCACAGTCGACCAATTAATCATCTGTAAATT
ATTCACATAAATAAATATTTATATAGTAAAAAAAAAAAAAAAA

Homology of Contig U35_11836 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None