barSeed - Barley Seed Development Database

Probe CUST_27348_PI390587928

Source Contig U35_11838

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27348_PI390587928	Hv_44K_v2	GTGCTGGCATGAAGCCCAATATCATTGTGTTTAATTCGGTTATCAACTCACTTGGGAAGG	654	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_36338.3	2100	2e-24	462 - 521	100	60 / 60	minus	ABC14587
MLOC	MLOC_36338.1	2296	2e-24	796 - 855	100	60 / 60	minus	ABC14587
MLOC	MLOC_36338.2	2182	2e-24	695 - 754	100	60 / 60	minus	ABC14587
JLOC1	JLOC1_23379.1	2308	8e-25	1442 - 1501	100	60 / 60	plus
Harvest21	ABC38643	716	3e-25	654 - 713	100	60 / 60	plus
Harvest35	U35_11838	717	3e-25	655 - 714	100	60 / 60	plus

Contig Sequence (717 bp)

>U35_11838 717 Hv_44K_v2
TGAGGGATCAAGGCTCCACTTCCTGGAAGAGAGGGACGAGGAATTGCTGTCTAGAAGGCT
GATGAAGCTGAGCCAAACCAACAAGGTCAGGAGTGCCATAGAGCTGTTTGATTCAATGCT
GGCGTCTGGCCTTCAGCCCAACTCGCATGCCTGCAACTCCCTTTTGGCTAGTTTTGTCCG
CAGAGGTTCCTCCGTGGATGCGATGAAGATGTATGAATTCATGAAGGGGAAAGGATTGGC
AACCGGCCATACATACACCTTGATACTCAAGGCTGTTGCAAGGACCGAAGGCTATATTTC
TGCTTTGCAAATGTTCAGTGAGATTGAGGAGTGCAACGAATCGAGGGAAACCCTTGATGT
GATTGTTTACAACACTATGATATCTGCATGCGGAAGAGCGAAAGACTGGAGGCAAGTGGA
GAAACTGTGGGGAAGGCTAGCTGAGAACTCTTTAAGTGGAACCTTGATGACTTACGATTT
GCTGGTTAGCACATTTGTGCAATGTGGACAGTCTGAGTTAGCTATTGCTGCTTATGAGGA
AATGCTCTGCGATGGGCTTGATCCCAGTGAAGATATAATGAAGGCCATCATTGCCTCGTG
CACCAAAGAAGGGAGGTGGGGAGTTTGCGCTGGCCACATTTAGGAGAATGTTGAGTGCTG
GCATGAAGCCCAATATCATTGTGTTTAATTCGGTTATCAACTCACTTGGGAAGGCTG

Homology of Contig U35_11838 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g11310.1	583	7e-99	protein\|PPR repeat domain containing protein, putative, expressed
Brachypodium v1_2	Bradi1g70330.1	575	4e-111
Arabidopsis v10	AT3G29290.1	540	3e-55	\| Symbols: emb2076 \| Pentatricopeptide repeat (PPR) superfamily protein \| chr3:11238421-11240125 FORWARD LENGTH=540