barSeed
Links

Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_27347_PI390587928Hv_44K_v2TGCAAGATTTGGACGGGTGGAAATATTTTGGAAGAAACATGTTGTGGCTGGGTGTCATTG28GeneList: None
MasterList: None



Probe Values

This probe has no recorded values for this experiment





Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_60617.723512e-241556 - 161510060 / 60minus ABC18178
MLOCMLOC_60617.835132e-241633 - 169210060 / 60minus ABC18178
MLOCMLOC_60617.1029752e-24440 - 49910060 / 60minus None
MLOCMLOC_60617.1131132e-24440 - 49910060 / 60minus None
MLOCMLOC_60617.241522e-241572 - 163110060 / 60minus ABC18178
MLOCMLOC_60617.140392e-241602 - 166110060 / 60minus ABC18178
MLOCMLOC_60617.440122e-241571 - 163010060 / 60minus ABC18178
MLOCMLOC_60617.941302e-241541 - 160010060 / 60minus ABC18178
MLOCMLOC_60617.335222e-241571 - 163010060 / 60minus ABC18178
JLOC1JLOC1_39543.240798e-252279 - 233810060 / 60plus
JLOC1JLOC1_39543.140748e-252274 - 233310060 / 60plus
Harvest21ABC222735093e-2537 - 9610060 / 60plus
Harvest35U35_118395023e-2529 - 8810060 / 60plus



Contig Sequence (502 bp)

>U35_11839 502 Hv_44K_v2
AAGCCCGAAGCACAGATTATCATGAAGCTGCAAGATTTGGACGGGTGGAAATATTTTGGA
AGAAACATGTTGTGGCTGGGTGTCATTGGGGGAGGCCTCATGCTGCTGCATCTTCTTCTC
CTCCTCTACTTGAGATTAAGGTACAGAGGAGGCACAGGAAAGTACGGAGCACTCGTCCTC
CCCAGGTTTGAGATCATGCTTGCGATCCTTGCGATGCCTTGTATATCCCAAGCGTCTGCA
GCGCTCATCAGAGGTGGGACAACCGGAGGGCTCGCCGTCGGGATCGTGCTCATCGGCATC
TTGACGGCGTTCCTGGTGGGCCTGCTGCTGTTCCTGTCGCTGGGCATCACGACGGGCAGG
CTGCTCCAGTACAAGGAGGTGCACCAGGAGGGGCAGGAGCACCGGTGGTACCAGGAGATC
ATCAGGCGGACGCTCGGCCCCGGCAAGCGCGGGCAGTGGACGTGGAAGGACCCCGCCCGC
GCCGCGCGGCTCGTCAAGCTCG



Homology of Contig U35_11839 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None