barSeed - Barley Seed Development Database

Probe CUST_27338_PI390587928

Source Contig U35_23818

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27338_PI390587928	Hv_44K_v2	GCAGAGTTTTGGACCTGTATGTAATTGCACTGATACAATAGATTTATCTTTTCACGATGA	636	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.220	1.662	0.938	0.982	0.252	0.376
Raw	37.168	76.277	39.356	66.347	4.708	9.421

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_55035.4	2858	7e-23	31 - 90	98	59 / 60	minus	None
MLOC	MLOC_55035.3	2606	7e-23	31 - 90	98	59 / 60	minus	None
MLOC	MLOC_55035.1	3757	7e-23	522 - 581	98	59 / 60	minus	None
MLOC	MLOC_55035.5	3214	7e-23	20 - 79	98	59 / 60	minus	None
MLOC	MLOC_55035.6	3550	7e-23	20 - 79	98	59 / 60	minus	None
MLOC	MLOC_55035.7	3029	7e-23	20 - 79	98	59 / 60	minus	None
JLOC1	JLOC1_35470.1	519	4e-23	5 - 64	98	59 / 60	minus
Harvest35	U35_23818	774	3e-25	637 - 696	100	60 / 60	plus

Contig Sequence (774 bp)

>U35_23818 774 Hv_44K_v2
ATCCCCTAGCTGCGAAAGTAGTTCTAGAATCCACTATGGATATCACACTGATTCCTCTTC
GCTCTCAGAGAAAAGCTTCTTGCTTCCGGACTCTCCTTGAAGCTCTAGAGTATGCTGAAA
ATACTCCAGAATCAAGTTTTGTCCTCCATTTGTTGTCATTGCTGCATGACTTGCAACAGA
AGCACCGGCTGTACCATCATATGGGTATATTTCTGGGAGAACTACTTGGTGCTGTTTATT
TGGTGGAAGGATCAAATATGGAACCGTCATTACTACTTAAGCCAATAAGCATTGTTGCTG
GCAATACAACAAGCACGGATGGACAGGTGGTAGTCGACGAACAGAGCGCAAATTCGGTGA
AGGTACTAGTGGATTTCGATAGTGATGAATATTACAGTCGAGTTGCCAATCATCTAGGCA
GCATGGAGCGGTCTGCCGTTATTGGCAGTTTTGCAGAACAGAGGGCATCATGGAGCAAGC
AACCAGATAACTTGAGAGTATAATGACTAATTTTCTACAGTAGCGGCAATACTGAAATGG
ACGGAAAATTCAGTTTCCTTACTGGATTAGATGTCCCAGCTTATGGAAAGAGTGTAAGCC
CTTTGATTCTTTCTTAGCGTTGATAGGAAAGTTTTTGCAGAGTTTTGGACCTGTATGTAA
TTGCACTGATACAATAGATTTATCTTTTCACGATGATCTTCATATTTTGTACTAGTACTT
ATAAGCAACATTGTTTTTTTTGTTTTCTTTGCTTCACAAAAAAAAAAAAAAAAA

Homology of Contig U35_23818 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g33644.1	900	2e-62	protein\|inosine-uridine preferring nucleoside hydrolase family protein, putative, expressed
Brachypodium v1_2	Bradi2g25630.1	851	2e-51
Arabidopsis v10	None