barSeed - Barley Seed Development Database

Probe CUST_27336_PI390587928

Source Contig U35_11840

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27336_PI390587928	Hv_44K_v2	CTCGTATCGTTCCAAACATGGTACAGATTTATACAATGCAGTTTAGTTTCTCTTGCAAAA	888	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.248	1.179	1.165	0.896	0.253	0.233
Raw	1229.347	1855.197	1591.537	1944.042	193.102	191.842

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_60703.1	633	2e-23	173 - 230	100	58 / 58	minus	None
MLOC	MLOC_60705.2	1992	2e-23	975 - 1032	100	58 / 58	minus	None
JLOC1	JLOC1_39613.1	1902	1e-23	990 - 1047	100	58 / 58	plus
Harvest35	U35_11840	961	3e-25	889 - 948	100	60 / 60	plus

Contig Sequence (961 bp)

>U35_11840 961 Hv_44K_v2
CAGGGGAGAGCCTGAGACATGGCCCCCCCCGCCCTCCTCCTCCTCGTCCTCGCCGTCACC
GCCCTCCACGCCCACGCCGCCTCCGCCGCGTTGTCCCAGGAGCCACCAGCGACGCCGTGC
GCGGCAGCCATCGTGTCCTTCTCGCCGTGCCTGGCGCACGTCGCCGTGGTCGCGCCGCCC
GCCCTGCCCTCGTCCGCGCCCACCAGCGCCTGCTGCGCGGCGTTCCTGCGCGCCGTTTCC
TCCGGGGACGGCGAAGGCGCTGGCGGAGGGGAGGGATGCTTCTGCCACCTGCTCCGCGAC
CCGCTCCTCCTCGGCTTCCCCGTCGACGCCGCGCGCCTCGGCGCTCTCCTCCCCACCTGC
GCCTCCGCGAAAACCTCCGCCGCCACGGCCGTGGAGGCCGAGGCCCTCTTCGCCGACAAG
TGCCGAGAGCTCAAGTCACTGCCTGAGATGCATTTTACACCTCCATCGCCACCTCCCGCA
CCCAAACTTTCTCCAGCTGCCGTTCCAGAACCAGCGTTCCCGGCTCCGAAAATGGAGGAG
CATTCGAGCTCGACGCCTGCGCCGGGTGATCGGTCGGGATCCGATGCCGTGTGTGCCTGC
CGGGTTTTCCTTGTGGCCTTGGTCTTGGGAGCAGCAGTCTTGATCACGCTGAACTTCTGA
TGGATGTTGGACGGACCTCGCTCTTGAAAGGTCTTTGCCCTCGCTCTTGATACAATACTT
GTGCGTTGCTGCGTCGTTCTTGATTGGATCCTCTTGTTGCATACGGTGAGGTACCACGTG
ATGCAGGGCATGATATTGATACTTGAAAACTCTTCCTGACAAGTGCAGTTTGTTCTGTGC
GCGTTTTGATGACCTGACAACGCAAGTAACTGTTATCCTTGTGGCATACTCGTATCGTTC
CAAACATGGTACAGATTTATACAATGCAGTTTAGTTTCTCTTGCAAAAAAAAAAAAAAAA
A

Homology of Contig U35_11840 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None