barSeed - Barley Seed Development Database

Probe CUST_27335_PI390587928

Source Contig U35_43794

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27335_PI390587928	Hv_44K_v2	AGCCTGCCTCTATCACTTCTTGCATCATGTCAATGCATTGTATGTTAATAGTTCATTTGT	347	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_28661.1	1169	2e-24	987 - 1046	100	60 / 60	plus	ABC40874
JLOC1	JLOC1_19189.1	1166	8e-25	983 - 1042	100	60 / 60	plus
Harvest21	ABC40874	594	3e-25	348 - 407	100	60 / 60	minus	ABC40874
Harvest35	U35_43794	594	3e-25	348 - 407	100	60 / 60	minus

Contig Sequence (594 bp)

>U35_43794 594 Hv_44K_v2
TTTTTTTTTTTTTTTTGGAAGAAACATATATTAGATAAAATTGTTGGATTAGAGTAATGA
TATTACATGAGGAACATCATCCAAATGTGATGTGCAATCTAAATATTTTCTTCACAACAA
AACTTAAACTCGAAGCATCCATCAACATTTGTACAACTTATCTAAAACTTAACGAGGAAC
ATCATCTAGCAAGAACTCCATCCCTACAACTTAATTAAAACTAAAAGCCTCCATCATCAT
CATCATCATCATCATCATGAACAGGAACATCGTCTTCATCATTGTTGTATAGTTTCCATG
CACCCATATAATCATCCATTTATCTTTTGAATCTACATACAAAAAACACAAATGAACTAT
TAACATACAATGCATTGACATGATGCAAGAAGTGATAGAGGCAGGCTACTAGCATTGTAT
CTACAAGTATATCTCTATATGCAAACTCCAGAAGTTCATCTACACCGGCTGAGAAATGAG
GACTTTCTCTAGGAAATCGCAATAGTAATTTGGTGGATTCTAAATCCATTGCACACTACA
TAAAAATAACAAATATTATTACAGTTGTAACCATTAATGAACTGCAAAAGCTTA

Homology of Contig U35_43794 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None