barSeed - Barley Seed Development Database

Probe CUST_27325_PI390587928

Source Contig U35_2707

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27325_PI390587928	Hv_44K_v2	AGGACGGTCCTCCATCATAGATGGTTCATTTCTACGATGCATCTTCTTCAGATTTTCAAA	3615	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.532	1.507	1.066	0.740	0.300	0.252
Raw	1142.189	1730.854	1077.346	1155.264	164.227	154.298

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_5291.8	3891	2e-23	3767 - 3824	100	58 / 58	plus	ABC09269
JLOC1	JLOC1_3397.2	3807	1e-23	3649 - 3706	100	58 / 58	plus
JLOC1	JLOC1_3397.1	3858	1e-23	3700 - 3757	100	58 / 58	plus
Harvest21	ABC09268	825	1e-23	752 - 811	98	59 / 60	plus
Harvest35	U35_2707	3689	3e-25	3616 - 3675	100	60 / 60	plus

Contig Sequence (3689 bp)

>U35_2707 3689 Hv_44K_v2
TCGAGCACTGTTGGCCTAGTTTACACTCGTCGCCAGAGTCAAATCAAAATCCATCGCTTC
TTCTCCCCTCTCCTCCTCTCCGCCTCCGAGTCCTCGAATCCCACCGCCGTGCCGCCTCCG
CCTCGCCATCCGACCCCTCCGCCTCCCTCGCCGCCGTTCCCGGTCGACCTCGTCGCCCTG
CTCCCTCCCCTCCCGCCGCGCTGCGCCGACCCCCCCTCCCCCGCCGACCGCGCGATCTTG
GGCGACGGTTTCCGAGAGGGATGGCCGACGACGGTGCCAGTGCTGTCGGGGGTTCTACGG
CGAGGGACGGCTCCGATGGCCCGGAACCCGCCACCATCGAGATCAACATCAAGACCCTGG
AGTCGCAAGTGCACAAGCTCCGGGTCGACAAGAATGAGACTGTTCTGAACCTGAAGGAGA
AGATAGTAGATGTCGCTGGGATCCCCGTGGAGCAGCAGCGGCTGATTTTTAGGGGAAGAG
TCTTAAAGGATGACCACCTCTTGTCAGAATACCACTTGGAAGATGGATATACATTGCATT
TGGTGGCTCGACGCACAGCTGAGGGCCAACAATCCTCTGAGACTTCTGAAGCAAGCCCTA
ATCCTAATGTTAATAATGCTGGAAATGGAGCAATGCTAGGAGATTACATGTCCAGGACTG
TTCGGGATATTCTTGGTAACTTTCTTGGGATGCCTGGTGGTATGGCAAATGCGACATTCT
CGGTACCACCAGATGGGGCCAATAATGGAAGAACTCAGCCAGGCCAGGCACCACCTGGGT
TCTCAATTCTCAACCATCAAATTCATGTGACACAGCTTCCACCTTCCGGCGCTATTCCTC
GCAACTTGGTTATTCCTGATTCCATGACGACCCTTTTGGAGTATATTGATCGCATGGACC
AAGTATTGCAGAACAATGGTATTCCACCATCCATGGACTCAAACGCTCAGGAACCACCAA
CATCAACATCAGATGATGCTTACTTGAACCAAAGATTTCCAAGTCCCGAGGTGCTGGCTT
CAGTTGTTGAAAGAGCCCAACAACTTCTCGGCGGCAGTGCTTCTTCCGCTCTTTCTCATC
TTGCACAACGTATTCAGAGTGATGCTGCCACTGGTGATGCATCTGTGCGAAGCCAGATAC
AGAATGAGTCGGCACAGTTGGGGGTAGCGATACAGCATTTGGGGGCTATGCTTTTTGAGC
TTGGACGGACAATGATGACGCTTAGAATGGGACCATCTCCTGCTAATGCTTTTGTAAATG
CCGGGCCTGCTGTTTATATNAACCCCCACAGGACCAAGTCCAATCATGGTTCAGCCGTCT
TTCCAGAGTGCCCCTCATTTTGGAGTTTCTAGCATACCGCCAGTTTTTGGTGTCTCTGGT
CCATTTGGTATCGTTGATCCTTCTCGAGCAAATGGTGTCAATGTTCATGGTGGCGCTTCT
GCAACAAGTGGTCCATCTGTTGGTTCAACCACTGCTTCTGCAACCGCTGCCAATGGGGAA
AGCCAAAATGCAGAAAGAACTCAAGGAGGTAATCCGTCAGCTACACGTGGATTGCCCCCA
AGAACAGTGGTTGCAGCTATACCGGGCTTTCCAGGAAGGTCCTCAGTTGGTGTTATCCTT
CCTGTTCAAATGAGAAGCCAAGTGGCAGCACCTAACCAGTCAACTGGTCCTCAAGGTTCT
CAGACTGCAGTGGGCAATGGATCTCAACCAATTTCAACCTATGTTGTTCCACAAGCTTCT
ACAGGCAGTGCTATTTCTTCTATGATAGCACAGATATCTGCACAGGTAGCCAATGCATTG
GCCGCAAATCCACAAGCATTGGCTTCACTTACATCATCTGTGCTGAACCCAGCAGCCCAG
GGGCCTCACCCAACCACAAACAATGGAGCTGGCACCGTGAGCTCTGTGACATCAGGAAAT
ACACAGTTACAAAATGAGCTTCCGGGTTCTCATCATGGACAAACTTCACTGAACGTGCAA
TCTCATGCAACTGGTGCAGGTACTGTGCCTTCAAATACATCTGATCCCAGCTTGACACCA
CAAGACATCAGTACTGTGAGTGCCTCCGATGTTGATAGCAGTCAACAACACTCCGTGGAA
TTGGCAGCAGCCAGCCTAGGAGGACAGCTGACAGCAGCCAGCTTAGGGGAACAGTCGACA
GGCACACGAACAGGTGATGTTCCCTTGGGCATGCCAGCAGAAAATACTGAACTGAAGAGC
AAGCCCTCAGATGGAGAAGCTGGAGAGTCTACTAAACCTACTGCCAGTGGTGGGTCTGGA
CCACTTGGTCTTGGTGGTGGCCTGCAGCCCAAGAGACGTAGTAAAGTAGCAAAGCCATCT
GGGACTAGCAGCAATTCTGGTGAAGCTGTTAACACATCTTCTGCCCCCAGAAGCCAGGAA
GCTGTTCTGATGGGACAGCAGGCTCTGCAAGCTCTTGTTTCAAGAGGTGCTAATGCAAGC
AGCGGCAGTGTTACGACTTCTCAAGCTCCATCTTCAACACCTCGGTCTGCTGCTGGAATG
ACTATGAGAAGACCGGGTGGTGAAGGGCAAGTTGACATCGGCAGTATGATATCAAGTGTC
CTCAACAGCCCGGTGTTCGGCAGTCTGATGTCAAATGTAGCTGGTCAACCAGGAACGGAA
TCATCAGCTGATGTGAGGAACATCATGGAAGACCTGACACAGAACCGTGCAGTGATGGAC
ACCTTAAGCAGTATGGTGCAAAATATGGATGCGCCACAAAGGGGCCAAGGTGGCTTTGAC
TTGTCCAGAATGATGCAGCAGATGATGCCTGTTGTGTCGCAAGTTCTTGGTGGACCTGCA
GCTCGTCCTGCCGGTACAGATGTTCAGCCTCGACAGAATGACAGGGACGTAAGCGACGCT
GTGGGCGGTAGAAGCTCTCAGATGGATCTTCAAGAAGCATGCCAACGCATCGAGCAACAT
GATGCCCCTGAGGATATCTTTGGTGCCGTCCTTGAGACTGCTGCTCAGGCTTATGGCAAC
GACGAGAGCATCGAGGTCATGCTTGAAGAGCTTGCCAATGACCCAGAGCTTGCTGATGAG
TACATGAAGCTTCTGCTGGCGCAAGTCGGCGAGAGGGTGGAGTCCGAATCCGAGGCCAAG
AAGGAGTCGTGAAGGACGGCCTGGGCGGGGTCGGTCAAGCGGGTGGTGGTACATTTCAGG
CGGCGTGGTTGAAAATGTGGTGAAAATATATACCTAACTCGTGACTTTTGGATGTAATTG
TTTCTCCCTGACTTTTGGATGTAGTTGTCTGTTGTTACTACCAAATTTTGCTAGTGACAT
GCACATAGCTAGCTAGCTTTGGGGAACCTTATTCCTGGATTTTGACGGCGACCAGATTCA
CGCATGTCGAAAGCACCCCTCGAGGAAGATTGTGTGCTTGTCTTGTCGCATCCCGTGGCA
CCTCAGAAACCCGATTTCTACAGACAATTCTTCAAGCCCTGTCAAGTGTTCGATGCCGGT
AGACAATTCTTCAAGCCCTGTCCACCAAGATTGGAAATTATCTTGAGCCTCTTGAGTTGG
ATTGGGTTGGGTTTGGTCTCAAAGGGATTGGAAAGCGTTGTATAATTGGAGCTTAAATCT
CTTTATTTCGAACTGAGGACGGTCCTCCATCATAGATGGTTCATTTCTACGATGCATCTT
CTTCAGATTTTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_2707 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g31540.1	850	0.0	protein\|ubiquitin family protein, putative, expressed
Brachypodium v1_2	Bradi1g30246.1	615	0.0
Arabidopsis v10	None