barSeed
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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_27322_PI390587928Hv_44K_v2GCTTTTATTGCCATTGAATCTTCCTAAATTATTGCAAGTGCTGAGCTTCCTGGTAAAAAA2098GeneList: green
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 0.8871.5141.3971.1930.3970.439
Raw 169.656434.898358.661484.61657.14468.174



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
JLOC1JLOC1_45871.212405e-221186 - 124010055 / 55plus
JLOC1JLOC1_45871.141575e-224103 - 415710055 / 55plus
Harvest35U35_271021693e-252099 - 215810060 / 60plus



Contig Sequence (2169 bp)

>U35_2710 2169 Hv_44K_v2
GCCGGCCCCGGGCCAAACGTTTCCCTTTTTCTTGTGCAATTCCCTCCTACAGATCGGATC
GCAGGTACCCACGGGATAAATATCACAGAAAGTGTGCACAGTGTTTGTGACGGCATAAGC
GCTTCGAATCTGCCGACGACGACGAACGACGGCGGTGGCGGATAGATGGATGCGGCTGAA
GCCAGTGCGAGATGGTGTGTGGTCACTGGCGGCCGCGGCTTCGCGGCGAGACATCTGGTG
CTGATGCTTCTCCGCTCCGGCGAGTGGCGCGTGCGCGTGGCCGATCTGGCCCAAGTCATC
TCTCTTGACCGAGACGAGGAGCAGGGTATCCTCGGCGCCGCCCTCCGCGAAGGACAAGCC
GTCTACGTGTCCGCCGACCTCCGGCACAAGGCCCAGCTCGCCAAAGCTTTTGAGGGGACA
GAAGTAGTTTTTCATATGGCTGCTCCAGACTCATCCATTAACAACTTTCATCTTCATTAT
TCGGTGAATGTTGAAGGAACAAGAAATGTCATTGATGCGTGTATCCATTGCAAGGTGAAG
CGACTTATCTACACTAGTTCACCAAGTGTAGTTTTTGATGGTGTTCATGGAATTTTTAAT
GTGGATGAATCAATGCCTTACCCAGATAAGTTTAATGATTCGTATTCAGAAACAAAGGCA
GATGCAGAAAAATTGGTGATGAGAGCTAATGGTAGGGATGGGCTTCTTACTTGTTGTATA
CGTCCAAGCAGCATTTTCGGCCCCGGTGATAAGCTACTGGTTCCTTCTCTGGTTGCTGCT
GCAAGGGCAGGCAAATCCAAATACATAATTGGTGATGGGAACAACTATTATGATTTCACC
TATGTGGAAAACGTTGCCTATGGCCATGTTTGTGCGGACAAAACTCTATCATCTGAAGAT
GGTGCAAAGAGAGCTGCTGGAAAAGCCTATTTCGTGACAAATGTGGAGCCCATAAAATTC
TGGGAGTTTATGTCATTGATCCTAGATGGTCTTGGGTATCAAAGGCCTTCAATAAAAATT
CCTGTCTCTGTTATGATGCCATTGGCTCATGTGGTGGAATGGACTTACAAGTCATTCTAC
AAGTATGGCATGAAGGTTCCTCAGTTGACACCGTCAAGGATCAGGCTCCTCTCATGCAAT
CGAACATTTAGTTGCGCAAGAGCGAAAGATCAGCTTGGTTATGAACCCATTGTATCACTC
AAGGATGGGCTGAAGAGAACAATAGAGTCGTATTCCCATATGCAAGCTCAGAATCAAAGG
AGTATATCAAAAACTTTGATTTTGCTTGGGAATGGAAATGTTGCAAAAACGCTTCTTTGG
GAAGATACGAAGCAAACAATGACAGTGCTACTATTGGCGGTTATCTACTACCAGTTATTC
ACATGTGGTTACACCATTATCACAGCAATGGCAAAAATTTTCTCACTAACAGCACTGTTC
TTGTTCATTCATGGCATGCTTCCTGCAAATGTGTTTGGCCACAAGATTGAGAAACTTGAG
CCCTCAAACTTCCACATCTCACAGGTGGAGGCACATCATATTGCTTGTTCAGTCAGTTCA
TCATGGAACTCATTAGTTGGCGTGCTAAAATCTCTTTGTAGGGGAACTGATTGGCCGCTA
TTTCTGAAGGTGGTATTCTTCTTACTGGTTATTAGCATCCTTAGTGCCATGTCTTCGGGG
GCTGCATTTAAAATAGGTATTCCTCTCATTTTCATAGGCTTCAAAGCATATGAGAAATTG
GAGGACACAATTGACAGCCTGGTGGGTGATGCTTGTTCGTTCGTTCTACAGTTTATTCCT
ATCAAGATATCTTTAAGGCAGAAACAAACATAAACAAGGAGAGCTCGTTAACAGTTGAAT
TTTATTTCGTAGTGATATTAAGTTTTACTTTTCAGTTATTGCAGATTTTCTATGAACTCT
TAGTTTGACATTTTACTCCTACAGAATCATCATTCAGAGTCTCAATAAAGTTCATAGAAT
GTTTTCTTAATGTCGTTAATTTAAGATATGGCGGTGTACGGTTTTTTAATTCTTTAGATG
TTTATACGACTGGACTGTATTGTGACTGTATTGTTCGACGTATAGCACATTGAAATTAGC
TTTTATTGCCATTGAATCTTCCTAAATTATTGCAAGTGCTGAGCTTCCTGGTAAAAAAAA
AAAAAAAAA



Homology of Contig U35_2710 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os03g29170.15620.0protein|sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating, putative, expressed
Brachypodium v1_2Bradi1g60280.15610.0
Arabidopsis v10AT2G26260.15640.0| Symbols: AT3BETAHSD/D2, 3BETAHSD/D2 | 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2 | chr2:11178237-11182872 FORWARD LENGTH=564