barSeed - Barley Seed Development Database

Probe CUST_27320_PI390587928

Source Contig U35_2712

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27320_PI390587928	Hv_44K_v2	GACTTTGAAGCTACGGATGCAACGGTTGTACTGAAACGAGATCAGAGGTTTCGTTTCAAA	1333	GeneList: purple MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.678	0.845	0.984	1.457	1.075	1.158
Raw	605.989	1216.727	1198.145	2673.527	735.399	854.904

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK363761	1480	7e-23	1376 - 1432	100	57 / 57	plus	ABC07427
JLOC1	JLOC1_15920.2	1128	4e-23	809 - 865	100	57 / 57	plus
JLOC1	JLOC1_15920.1	1495	4e-23	1176 - 1232	100	57 / 57	plus
Harvest35	U35_2712	1408	3e-25	1334 - 1393	100	60 / 60	plus

Contig Sequence (1408 bp)

>U35_2712 1408 Hv_44K_v2
GACGCATTCATTCATCGCTTTTCTGTGAAGCGGAACAAATTCCCGGAGGATTCCATTCGT
AGACGGGCGGCTGTGATCACGAGCTTCCATTACGGGCGCGGAATCATCGGTGATCGGCTT
CTTCGCGGGATTCGGTTCCATCTACATACTACTACTACTACAAAGGGTGTCTGAGGTCGT
TGCGACTGGAGGAAGCGGGGAGCCATGGGGGCGGGGGTCTCGAGCTTTTTATTCGGCGTT
GGCGGCCCGGCGGCGGAGGCTGCGCCGGGTGCTGCGGGCCTGGGCGACCTGCCGGAGCTC
TGCGCCGCGCAGGTGCTGCTCCGGCTCGACGCGCCGGAGATCTGCCGCCTCGCGCGGCTC
AACCACGCGTTCCGCGGCGCCGCGGGGGCAGACTTCGTGTGGGAGGCCAAGCTGCCGGAG
AACTACCGCCACCTCATCGGGTACGTCGAGGGCGGGGGCGAGGAGGGCAGGCGCCGGCGC
CGCCGGGCCGGCACCAAGGAGATCTACGCCAGGCTCTCCAGGCCCGTCTCTTTCGACGAC
GGCACCAAGGAATTTTGGCTAGAGAAGAGCAAAGGTAGGGTTTGTATGGCGCTATCCTCC
AAAGCTCTGGTCATAACTGGCATCGATGACAGGAGATATTGGACGCACATGCCGACCACA
GAATCAAGGTTCCAGTCCGTGGCATACCTTCAGCAAATCTGGTGGTTTGAAGTGGTTGGA
GAGCTTGATTTCTGCTTCCCTGTGGGAACCTACAGTTTGTACTTCAGGGTTCATCTCGGG
AAGTTCAGCAAGCGGTTTGGACGCCGTGTTTGTAGCACTGAGCACGTCCATGGTTGGAAC
AAGAAGCCGGTGCGCTTCCAGCTCTCCACCTCGGACGGCCAGAATGCATTATCTCAATGC
TACCTGGACGAGCCCGGGAGTTGGGTTCTGTACCATGCAGGCGATTTTGTTTCCTCGAAG
CCAGGCCAATCACTTAAGCTGAAGTTCTCCATGGCGCAGATCGACTGCACGCACACGAAA
GGTGGCCTGTGCGTCGACTCGGTGCTCGTGTACCCCAAGGGCTTTCAGCAGGAGAAGGTG
GTGACCGGCAAGATCTCGGAGATGAGATCGTAGTTGTAGTGGTGGTGGCGCTTGCACCGC
TAGAGTTGTAGAGAAAATGCAGCTTGCAGCCCAATCCTATTATCAAGTTGGGCTCTAGTA
TGCAACGGATGAAACTGTCTGTGTAAAGAACTGTAGACTCAGGGTCTGTGTGGTGAGGTA
CGTCAGTCAGAGTGGTTTGTGTGTCGTCCAGTCTTCCCATGGGTAATTTTTTTCTCTCCC
TGGTGCTAAATGAGACTTTGAAGCTACGGATGCAACGGTTGTACTGAAACGAGATCAGAG
GTTTCGTTTCAAAAAAAAAAAAAAAAAA

Homology of Contig U35_2712 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g37830.1	311	7e-156	protein\|OsFBX391 - F-box domain containing protein, expressed
Brachypodium v1_2	Bradi3g31520.1	302	8e-177
Arabidopsis v10	AT3G61060.2	291	2e-110	\| Symbols: AtPP2-A13, PP2-A13 \| phloem protein 2-A13 \| chr3:22603166-22604336 FORWARD LENGTH=291