- Probe CUST_2731_PI390587928
- Source Contig U35_9196
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_2731_PI390587928 | Hv_44K_v2 | GATTGGGAGGATTAGTTTTGTGTACGATGAATAAGTTTGTGTCGGTTGATTGATCATATA | 408 | GeneList: paleturquoise MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 27.619 | 6.864 | 1.649 | 0.319 | 0.033 | 0.031 |
| Raw | 35507.933 | 13136.380 | 3041.197 | 902.303 | 35.725 | 35.048 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| JLOC1 | JLOC1_40176.1 | 595 | 8e-25 | 475 - 534 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC03693 | 595 | 3e-25 | 504 - 563 | 100 | 60 / 60 | plus | ABC03693 |
| Harvest35 | U35_9196 | 500 | 3e-25 | 409 - 468 | 100 | 60 / 60 | plus |
Contig Sequence (500 bp)
>U35_9196 500 Hv_44K_v2 GCACACGCACAGCAAAAGTAGGAGGGAAAAAAATGGAGGCCAAGGTGATGAAGGTCTTCG CCATGCTGATGCTCTTCTCCCTCTGCAACAGAGGCAGTGCGAAGTGCACCCTGTCGGACC TTCACGTGACCCAGACGGCGACGGGGAAGAACGCCGGAGGGAACCCGGAGTACGCCGTGG AGGTGGAGAACAAGTGCATCTGCACACAGACGGACGTCAAGCTGCTTGCCCCTGGGTTCA AGTCCTCCGAGCCCGTGGACCCCCAGCTCTTCCGGCTTGACGCCGACGGCAAGCTCGGCA CCCTCAACAACGCCTCCCCGGTGTACTACGGCTACAAGATCAAGTTCAACTACGCGTCGG CCACCAAGTTCAGCCTCGCGCCCTTCTCCTCCGGCATCGCATGCTCTTGATTGGGAGGAT TAGTTTTGTGTACGATGAATAAGTTTGTGTCGGTTGATTGATCATATATATACGTCTTTA ATTAAAAAAAAAAAAAAAAA
Homology of Contig U35_9196 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |