barSeed - Barley Seed Development Database

Probe CUST_27311_PI390587928

Source Contig U35_2721

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27311_PI390587928	Hv_44K_v2	TCCTTGTGAAAGATTTTGCCTACGCCTTCGGTGCAAAAGCTCGACTTTGGTTTCAAAAAA	1311	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.574	3.557	1.256	0.862	0.308	0.297
Raw	1149.146	2646.863	741.728	818.682	101.049	109.805

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK364086	1346	3e-21	1261 - 1314	100	54 / 54	plus	ABC06526
MLOC	MLOC_8100.1	637	3e-21	445 - 498	100	54 / 54	plus	ABC06526
JLOC1	JLOC1_5365.1	734	2e-21	448 - 501	100	54 / 54	plus
Harvest21	ABC06526	1382	3e-25	1312 - 1371	100	60 / 60	plus	ABC06526
Harvest35	U35_2721	1382	3e-25	1312 - 1371	100	60 / 60	plus

Contig Sequence (1382 bp)

>U35_2721 1382 Hv_44K_v2
CACCATTCCTCTCCCCCTACTTAACAGCGTCTCCGCCCCATCCCAGCTCTCCAACTCAAC
TCAACTCAACACGCAAAGCAAATTACCAGAGAAAAGAAAAGCAAGAGCAGCGACCTGAGC
TAGGAGAAAGAGCATCGAAAGAAGAGAAAGAAAAGGCGAGCGAGGATGTGTGGTGGAGCG
ATCCTCGCCGAGCTCATCCCGGGCGCGCCGGCGCGGCGCGTCACGCCCGGCCACATCTGG
CCGGGCAAGGGGGCCAAGCAGGCCAAGGCTGCCGCCGCGGCCGACGACTTCGAGGCGGCG
TTCCGGGAGTTCAACGAGGAGGAGGACGACGAGGAGGAGGTCGTGGTGGAGCGGCAGGAG
GAGGTGGCCGAGAGCAAGCCCTTCGTTTTCGCTGCTTCCCCCAAGAAGCAGCTGCGGCAG
GAGGAGGCGGCGCCTAGCCGGAGCAGGAAGCCGTCGCAGTACCGGGGCGTCCGGCGCCGG
CCGTGGGGCAAGTGGGCCGCCGAGATCCGCGACCCCGTCAAGGGCGTCCGCGTCTGGCTC
GGCACCTTCCCCTCCGCCGAGGCCGCCGCGCTCGCCTACGACGACGCCGCGCGCGCCATC
CGCGGGCCCAGGGCCAAGCTCAACTTCCCCTCCTCTGCCGTCGCCGCGGCCCCTGGAGCG
CGCAAGCGCGGCCGCGCCGGCGTGGCCCTCGCTGCCAACGCAAAGCCGGTCATCCACATC
ATCGACGAGGAGGAGGAGCACGCCGCCCTGGCCGCGCCCGCGTCGTCCTTCGTCAAGCAC
GAGGCCGAGGCGAGCGAGGGGTCCGAGTCCAGCGGCGCCCTCCCCGACTTCTCGTGGCAG
GGCATGTCGGCGTTCGACGAGGCGCCGGCGTACCCGGCCCCGGAGCCGGAGACCGAGCTG
CCCGCGAAGCGGGCGAGGACCGAGCCGGAGGACACCGACGAGGGCATGTCGGCACACCCG
GCATCCGACTCCGACTCCGACGCGCTGTTCGACGCCCTCCTCTTCGCCGACCAGTTCGCC
TACTTCAACGGCGGCGCCTACGAGTCCCTCGACAGCCTGTTCAGCGCCGACGCTGTGCAG
AGCTCCACGGCCACCGCCGCGGGCGAGGCGGCCATGGGGCTCTGGAGCTTCGACGACGAC
TGCCTCGTCGACGAGTGCAGCCTGTCGTTCTAGATCCTGTTCCGTGTGCGTTCCTTCATG
CCATGCGATGGTGTGTGTGTAAATAGAGTAGTTTCGATCTTGTGGAATCCGTTCGTTCGT
CGTCGCTTCTTGGATCAGCAAGTGATGGTGGGTACTGTGTAAGAGTTGACATCCTTGTGA
AAGATTTTGCCTACGCCTTCGGTGCAAAAGCTCGACTTTGGTTTCAAAAAAAAAAAAAAA
AA

Homology of Contig U35_2721 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g08500.1	330	2e-62	protein\|AP2 domain containing protein, expressed
Brachypodium v1_2	Bradi1g72450.1	339	3e-63
Arabidopsis v10	None