barSeed - Barley Seed Development Database

Probe CUST_27304_PI390587928

Source Contig U35_2729

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27304_PI390587928	Hv_44K_v2	AGATTCATACAAAGCAGAACTCGCAAGGCAGATTCTGCTCAGCTTCATTGTCAAGTCGGT	780	GeneList: skyblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.396	0.943	2.082	1.399	1.375	0.951
Raw	16.687	55.211	117.706	114.077	42.581	32.005

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_60591.2	3821	2e-24	792 - 851	100	60 / 60	minus	ABC06105 ABC11912
MLOC	MLOC_60591.1	2918	2e-24	792 - 851	100	60 / 60	minus	ABC06105
MLOC	MLOC_60591.3	5905	2e-24	737 - 796	100	60 / 60	minus	ABC06105 ABC11912
MLOC	MLOC_60591.4	5897	2e-24	737 - 796	100	60 / 60	minus	ABC06105 ABC11912
JLOC1	JLOC1_39532.2	6129	8e-25	5249 - 5308	100	60 / 60	plus
JLOC1	JLOC1_39532.1	5165	8e-25	4285 - 4344	100	60 / 60	plus
Harvest21	ABC06105	1553	3e-25	781 - 840	100	60 / 60	plus	ABC06105
Harvest35	U35_2729	1553	3e-25	781 - 840	100	60 / 60	plus

Contig Sequence (1553 bp)

>U35_2729 1553 Hv_44K_v2
GCACGAGGACAAAGATGTGGCAGTGTCACCGCCTGGCACAGTGTGGAAACCAATTTTGGA
ACAGAAGGAAGCAAAGGAGAAGGATAATGAACAAGATACTGATGCAGCACCTTCATCCGA
GGAAGGAGATAGAAAGCTTATAGATGAAGAGAAGGAGAAGTCAAGTGATGAGAGCATCAA
AGAGATTGTCTCAATTCAGCCAGAGGAAAGCAGTCCCACAGAGCCAGAGAAAGCTTCTGA
CAGCAATAGTGACGGAAGCTCATCTCCGGGCAAGAAAACAAGTGGAAGCAAACTTTCAGC
CTCAGCACCTCCATTCAAACCTGGATCACTCTTATCAGTGTCCCATCCTTACAGCACAGT
GGCAATATATGATGCTAGCGTTGTGCTTCAGCCGATTCCAAGTCAAGCAATGGAGATTCT
CCCTCATGCTGTCGATACTAGAGTACCCCGTGGCCCTCGGTCCACCTTGTACTATCGTAC
TGGGCATTCTTTCCAAAGGAAACAAGGTTATACGCAGAGCCAGAGCACTATTCTGAGAGG
CAGCACCTCCCCCCCAACCATGAATCCCCATGCTGCTGAGTTTGTGCCTGGAAAGACTGT
GCAACAAGCTGATTTGGCTACAGAGGAACAAGCTAATTCTGTGACTGATCCAGCAGGTCA
GCAGTTGGCATCACATGCTTCAGATGAAGTGAAAGTCGATGTTCGTGAGGCTGACAAGGC
AGGTCAAGTGGAGAAGACAACTCCAGGTAAAGGGAAGGAACGAGCGAAAGACGCGATGAG
AGATTCATACAAAGCAGAACTCGCAAGGCAGATTCTGCTCAGCTTCATTGTCAAGTCGGT
CCATGACAGCTTAGGTTCGACTCGACCTCAACCGGACAGAAAACCAAGCGGGTCAGATGA
AGCTAGTAACGAACAGAGCAGCAACATAACCAAGACCGCCTTAAGTCCAAAAGAGTTCGA
CAAACAACCGAAGGCCACCGAGGCGCCCAAAAGCGAGAAGGATACAGAGGGATTTACAGT
GGTTTCAAAGCGCAGAAAAAGCAAGCAGCATTTCGTGAATCCCATAAACGGTCTCTACTC
CCAGCAGTCAATCTGCACTTCGGTCAGCTGAGGTTGCTGCACTTCCTGAGATCTGCAAGC
AGTGCAACGTGTTGGAAGATGGTATTGCTTACTTTGCTCTTTTAGGCGCTTGGTAGCAGA
GTTTTGCCCTATATTCAGATGAACGAGCATGTTGTCAAACTGTACAAAGTTTTCCGCCGC
CCCCCCTTTCCAATATTTTTTTCGTAATTTGAGGTAGCAGAATAAAATGGTTTCCCCCCT
CCTTCCTATGGATGTACTATGTTATTATGACAGAATTATAGGATATAGTAGCAAACATTC
ATTTCCTCCCAACACTCCAATGATGCTCCTGAATTTGCTTTGATGATTTGCACTCGTCAA
GTACCGCTCCAGAACGTAGTTTTGCCCTATCCAGATGACTGAGCATGTAGCCAAACTGTA
CAAATATTTCCCCAATTCCATTTTCTAATATTTTTTGAATTTGGTGTGCAGCA

Homology of Contig U35_2729 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g55230.1	1721	1e-137	protein\|tetratricopeptide repeat domain containing protein, putative, expressed
Brachypodium v1_2	Bradi5g23890.1	1711	2e-155
Arabidopsis v10	None