barSeed - Barley Seed Development Database

Probe CUST_27302_PI390587928

Source Contig U35_2731

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27302_PI390587928	Hv_44K_v2	AGCTGCACTCAGGTTACAAAATCCGGACAAACTACAAGGTCTTTTTAGTGAAGCAAAAAA	1507	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.068	1.237	1.221	1.022	0.412	0.463
Raw	85.036	158.821	131.649	181.888	24.058	30.579

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_5937.1	1822	3e-21	1715 - 1771	98	56 / 57	minus	None
MLOC	MLOC_5938.2	5949	3e-21	2778 - 2834	98	56 / 57	minus	ABC08248 ABC18711
MLOC	MLOC_5938.1	5946	3e-21	2778 - 2834	98	56 / 57	minus	ABC08248 ABC18711
MLOC	MLOC_5938.3	5192	3e-21	1900 - 1956	98	56 / 57	minus	ABC08248 ABC18711
JLOC1	JLOC1_3855.2	5536	2e-21	3251 - 3307	98	56 / 57	plus
JLOC1	JLOC1_3855.1	5541	2e-21	3256 - 3312	98	56 / 57	plus
JLOC1	JLOC1_3854.1	5146	2e-21	1954 - 2010	98	56 / 57	minus
Harvest35	U35_2731	1578	3e-25	1508 - 1567	100	60 / 60	plus

Contig Sequence (1578 bp)

>U35_2731 1578 Hv_44K_v2
TATATTTTCTTGCCCAAGGTTATGAAGATGCAGAGCCGGTGTCATCTTTGCTTACACCTT
ATCTTCCTAATGTTATCGCTGCACTCCTTACTGCTGCGGATCGTAGTGATATGACCCATG
TGAGGCTTCGTGCATCTGCTTATGAAGCGCTGAATGAGATTGTAAGAGTCAGCAACATAC
CTGAAACTTCAAGCATCATAGGCCAGTTATTGCAGGAGATCATGAGAAGATTGAATCTGA
CATTTGACCACCAAATATTTTCATCAGGCGACAAGGAGAAGCAAAGCGATCTGCAGGCTT
TGTTGTGTGGTGTACTGCAGGTCATTATCCAGAAACTGAACAGCTCGGATGCAAAGTCCA
TAATTGCACAGACTGCTGACCAGTTGATGCTTCTGTTCCTCCGTGTCTTTGCTTGCCACA
GTGCTACTGTACATGAAGAAGCAATGCTGGCCATTGGTGCTCTTGCTTATGCCACTGGCC
CAGATTTTGAGAAATACATGCCTGAGTTTTTGAAGTACCTTGAGGCAGGATTGCAGAATT
ATGAAGAATACCAAGTATGCTCCATCTCTGTAGGGGTGGTGGGTGATATTTGCCGTGCCT
TGGAAGATAAAATCTTGCCCTTCTGTGATGGGATTATGACTGTGCTTCTCAAGGATCTCT
CAAACTCACAGCTCAACAGGTCTGTCAAGCCCCCAATTTTCTCATGCTTTGGAGACATTG
CTCTTGCCATTGGTGAAAATTTTGAGAAATACCTGCCGTATGCTATGCCGATGCTTCAAG
GGGCGGCTGAGCTTCTTGTTGTTTTGGATCAAAATGACGAGGATATGGTTGATTATGGTA
ACCAGCTCAGACGGGGAATTTTTGAGGCATACTCTGGCATACTACAGGGTCTAAAGGGCG
CAAAAGCTCAGCTGATGATACCTTATGCAGGCCATCTATTGCAATTCACTGAAGCTGTCT
ACAAAGATGGGAGCAGGGATGAGAGCGTGACAAAAGCCGCCGTTGCTGTCCTGGGGGATC
TTGCGGACACACTTGGGCCAATCTCTAAGGATCTGTTCAAGAGCCACCTCTTCCATGTTG
AGTTCTTGAGGGAGTGCCTCGATCTGGATGATGAAGTGAGGGAGACGGCGTCATGGACCC
AGGGGATGATAAACCAAGCGATAGTTTCTTAGACGAGAAACTATCTTACCTTGTCTTGTT
ATGGTGGATGTTTGGTTTTATTGATGCACCAAACGGAATTTGGGTTTGGCTCATATGAAC
AGAAGGGTACCAAAGTATATGTAGCGTCAGTCAGTCAGTAGGAACCTTGTCGTAGATGTC
TTGGGTGGTTTTATTATTTTCAGTCTGTCAAGTCGTTGTGCGTCACATTCGACGGCAGTG
GGGTTTACGTCTTGAACAGCTAAACTCATTATTATTGTATTCTACTCGGTTTGTGTTGCA
AAAAAAAAAAAAAAAAATGCTGCGGATGTCTTTTTTGCAGGGTGTTGTGCGTGCTGCAGT
ATGCAGTAGCTGCACTCAGGTTACAAAATCCGGACAAACTACAAGGTCTTTTTAGTGAAG
CAAAAAAAAAAAAAAAAA

Homology of Contig U35_2731 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g28510.2	869	0.0	protein\|importin subunit beta, putative, expressed
Brachypodium v1_2	Bradi4g00730.1	869	0.0
Arabidopsis v10	AT3G08943.1	871	1e-160	ARM repeat superfamily protein \| chr3:2719198-2721911 REVERSE LENGTH=871