barSeed - Barley Seed Development Database

Probe CUST_27292_PI390587928

Source Contig U35_2742

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27292_PI390587928	Hv_44K_v2	GTTCCATGGAACAAAACCCTTGCCTGTAACTGTGTTCCATCTTACAATGGGAGTTGAGCT	699	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.118	1.175	1.054	1.072	0.489	0.613
Raw	508.733	834.986	660.878	1056.959	170.722	227.295

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_7973.1	844	2e-24	2 - 61	100	60 / 60	minus	ABC12134 ABC38902
MLOC	MLOC_7973.2	854	2e-24	2 - 61	100	60 / 60	minus	ABC12134 ABC38902
JLOC1	JLOC1_5278.2	981	8e-25	805 - 864	100	60 / 60	plus
JLOC1	JLOC1_5278.1	947	8e-25	771 - 830	100	60 / 60	plus
Harvest21	ABC12134	788	3e-25	30 - 89	100	60 / 60	minus	ABC12134
Harvest21	ABC38902	464	6e-22	39 - 98	97	58 / 60	minus	ABC38902
Harvest35	U35_2742	788	3e-25	700 - 759	100	60 / 60	plus

Contig Sequence (788 bp)

>U35_2742 788 Hv_44K_v2
GCTGAGCTCCATGAGGGAGCACGCCGACCTGCTCAGCTCCGTGCGCGGCGACATCACCGA
GTCCAAGGCTACCGGCGGCATGTCGCCGAGGGTGCATTTGCTCCGGGAGAGGGCTTCCAT
TCACGGCAGCGTCAATCAGATAGACGAGGTAATTGGGCAAGCTCAAAGCACAAGAGCAGC
ACTATCCAATCAGAGGGCCTTGTTTGGAGATGTTCAGGGAAAAGTCAAGCAGTTGGGTGA
AAAATTCCCTGTGGTCCGAGGCCTCCTCGGCGCCATCAAGAGGAAGAAATCAAAGGACAC
GATCATTCTTTCAGCAGTAATCGCGGCCTGCACCATCTTTTTGATCATCTACTGGCTCTC
AAAATGATCGGTGCGTTGTTGGAAAAGATTGCGGCGGGGACTCCCCCTCTCGGCACAGAG
TGACCGACAGGTGACAACAGATGGCACGATAAAAAGACTTGGTGATTATCCATTTGTTAG
GGCTAGTGTGAGGGAATTGGACACCCCGTTGTGTTTAGCTCTCACCGTGCTGCCCTCGAC
ATATCTTGTTTTTGGAGATCTCCCCTGTCATTTATACCTAGATCAATTTTGTTTGGTGAA
TTGCCTGCGAGGCCATGCTGGTTCAAGTAAATACGATGACACACTTCTGATACTTCCATC
TTACAATGGGAACTGAGCTGTTGCTTGTACAAATACTGTGTTCCATGGAACAAAACCCTT
GCCTGTAACTGTGTTCCATCTTACAATGGGAGTTGAGCTGCTGCTTGCACTAAAAAAAAA
AAAAAAAA

Homology of Contig U35_2742 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g03450.1	248	2e-72	protein\|vesicle transport v-SNARE protein, putative, expressed
Brachypodium v1_2	Bradi3g02630.1	254	3e-74
Arabidopsis v10	AT2G45200.2	257	1e-57	\| Symbols: GOS12 \| golgi snare 12 \| chr2:18637689-18639640 REVERSE LENGTH=257