barSeed - Barley Seed Development Database

Probe CUST_27288_PI390587928

Source Contig U35_2746

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27288_PI390587928	Hv_44K_v2	GTAACTGTTATAAACAATAACAACATTGCTAATAAAGTTATGCCGCACTGTTTCGCTCTC	2252	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.838	2.134	1.136	0.704	0.256	0.266
Raw	1309.310	2392.672	1099.135	1047.645	138.976	157.038

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK371921	3055	2e-24	2994 - 3053	100	60 / 60	plus	ABC08313
MLOC	AK369330	2825	2e-24	2764 - 2823	100	60 / 60	plus	ABC08313
JLOC1	JLOC1_24996.1	2308	4e-23	1914 - 1973	98	59 / 60	plus
Harvest21	ABC08313	2328	3e-25	2252 - 2311	100	60 / 60	plus	ABC08313
Harvest35	U35_2746	2356	3e-25	2253 - 2312	100	60 / 60	plus

Contig Sequence (2356 bp)

>U35_2746 2356 Hv_44K_v2
AACACCATTAGCTGCAAAAAACATGACCCGGTCTCATAGTATATCCAATGATCTTCATGC
GGTTCAACCTGATCCAGTTGCTGCAGATATTCTTCGAAAAGAACCTGAGCAAGAATCATT
TATCAAGCTATTAACTGCTCCACATGAGATTCCATCTCCTGATGAAATAGAGGTCTATAA
AATCCTTCAAAAGTGTCTCGAGTTAAGAGATTGTTACCTTTTTAGAGAAGAGGTCGCTCC
ATGGGAGAAGGAGGTCATAAATGACCCCTGTACACCAAAACCTAATCCTAACCCATTCAC
TTTCGTGCCTGAACCAAAATCGGAGCATGTTTTCCAAATGGTCGATGGTGTTGTCCAGGT
CTATGCGGATAAAGACTGTACGGAAAGGATTTATCCTGTTGCTGATGCTACAACCTTTTT
CACCGACTTGCATTATGTTCTCCGGGTGACTGCCGCGGGGAATACAAGAACTGTCTGTCA
TAACCGGTTGAATCTTCTAGAGCATAAGTTCAAATTTCATCTGATGTTAAACGCGGACAG
GGAGTTTCTTGCGCAGAAGACTGCACCACATCGTGATTTTTACAATGTTAGGAAGGTCGA
CACTCATGTTCACCACTCAGCATGCATGAATCAGAAACATTTGCTGAGATTCATCAAGTC
CAAACTGAGGAAAGAACCTGATGAGGTTGTCATTTTCAGAGATGGTACATATATGACTTT
GAAGGAGGTTTTTGAGAGCTTGGACTTAACTGGGTATGACTTGAATGTTGATTTGCTAGA
TGTCCACGCTGACAAAAGTACATTTCATCGTTTTGACAAATTCAACCTTAAATACAATCC
ATGCGGCCAAAGTAGGTTACGGGAGATTTTCCTTAAACAGGACAATCTTATTCAAGGACG
ATTTCTTGCTGAGCTGACGATGCAAGTTTTTTTCTGACCTTAATGCAAGCAAGTATCAGA
TGGCTGAATATAGGATTTCAATCTATGGGAGGAAGCAAAGTGAGTGGGACCAACTTGCGA
GTTGGATAGTAAACAATGAATTGTACAGTGAAAATGTTGTTTGGCTGATTCAGATTCCAC
GCTTATATAACGTGTACAAGCAAATGGGCATTGTTACATCATTTCAAAATCTTCTTGACA
ACATTTTCCGGGGTGTGTTTGAGGTTACTATTGATCCAGCTTCGCACCCGCAGCTTCATG
TCTTCCTAAAGCAGGTTGTAGGGTTGGATTTGGTTGATGATGAGAGTAAACCTGAAAGGC
GTCCAACTAAGCATATGCCTACACCTGAAGAATGGACAAATGTCTTCAACCCTGCATTTT
CATATTATGCGTACTACTGCTATGCTAACTTGTACACACTGAACAAGCTGCGTGAGTCAA
AGGGGATGAATACTATCAAATTCCGTCCACATGCTGGTGAGGCTGGAGATGTTGATCACT
TGGCAGCAACATTTCTTCTTTGTCACAGTATATCACATGGAATCAATTTAAGGAAGTCTC
CTGTGCTTCAGTATCTGTACTATCTTGGTCAGATCGGTCTAGCAATGTCCCCATTAAGCA
ACAACTCCTTGTTTCTTGATTACCATCGGAACCCTTTTCCTATGTTTTTCCAACGAGGAC
TGAATGTCTCATTGTCCACGGATGATCCATTGCAAATTCATCTGACAAAAGAGCCGTTGG
TCGAGGAATACAGCATTGCCGCTTCGCTGTGGAAGCTCAGTTCTTGTGATTTATGTGAAA
TTGCAAGAAATTCTGTGTATCAATCAGGGTTTTCACATGCTCTCAAGGCACATTGGATTG
GCAAGAACTACTACAAGAGAGGCCCCTCAGGGAACGATATCCACAGAACGAATGTGCCCA
CCATCAGGATCGAATTCAGGGACCTGATCTGGAGAGACGAAATGCAGCTCGTTTACCTTG
ATAACGTCATCTTACCTGACGAGGTGGACCAGTAAGATGCATATAGATATATATGCCCTA
GCCGCCGCTGTGGGGGATGAATCATACCTTTTGTGTACACTTCATGATGCACATCACAGT
TCAACATGGCGCTGGAGCCCCAAACGGCAAACCTCCAACTAAATACCGTCCCAAGAACCA
CCATCAAAGTGGAAGAAGAAGAAGAAGACCTACAGAATAATTTGAGATCGCAGGTGTGGA
GCGACGGAGCGGCTCGCCATTGTGCTAGACTAGCATTACAGGGAGGCAAGTGCCTGGTGT
AAAACTGTCGCCCTTCTCGTCTGTAAAGGATTGTAACTGTTATAAACAATAACAACATTG
CTAATAAAGTTATGCCGCACTGTTTCGCTCTCAAAAAAAAAAAAAAAAAGAATTTTATTA
AAAAAAAAAAAAAAAA

Homology of Contig U35_2746 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os05g28180.2	472	protein\|AMP deaminase, putative, expressed
Brachypodium v1_2	Bradi2g28450.4	863
Arabidopsis v10	AT2G38280.1	839	\| Symbols: FAC1, ATAMPD \| AMP deaminase, putative / myoadenylate deaminase, putative \| chr2:16033767-16038793 REVERSE LENGTH=839