barSeed - Barley Seed Development Database

Probe CUST_27285_PI390587928

Source Contig U35_2749

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27285_PI390587928	Hv_44K_v2	TTCGAACGGCGCGGTGCTGGATTTGGACCCTGTGAAGACTATTAATGGCAGCGCACGCAA	5	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_60716.2	1785	2e-24	412 - 471	100	60 / 60	plus	ABC06732 ABC06733
MLOC	MLOC_60716.1	1237	3e-22	416 - 471	100	56 / 56	plus	ABC06732 ABC06733
JLOC1	JLOC1_39619.1	1750	8e-25	360 - 419	100	60 / 60	plus
Harvest21	ABC06731	683	3e-25	6 - 65	100	60 / 60	plus
Harvest35	U35_2749	683	3e-25	6 - 65	100	60 / 60	plus

Contig Sequence (683 bp)

>U35_2749 683 Hv_44K_v2
GCGGCTTCGAACGGCGCGGTGCTGGATTTGGACCCTGTGAAGACTATTAATGGCAGCGCA
CGCAACCTGCCGGCGCCCCTGCGGATCGCGGACCTGTCCCCGGCGCCCATGCACGGCTCG
GAGCTGCGCGTGGCCTACCAGGGCATGCCTGGCGCGTACAGCGAGAAGGCGTCCGTAAAG
GCGTACCCGGGCTCCGACGCCATCCCGTGCGACCAGTTCGAGGTGGCGTTCCAGGCCGTC
GAGAACTGGATCGCAGACCGCGCCGTGCTCCCGGTGGAGAACTCGCTGGGAGGAAGCATC
CACCGCAACTACGACCTCCTGCTCCGGCACCGCCTGCATATCGTCGGCGAGGTGCAGCTC
CCCGTGCACCACTGCCTCCTCGCGCTCCCGGGCGTGCGCAAGGAGGACGTCACCCGCGTC
ATCAGCCACCCGCAGGCGCTGGCGCAGTGCGAGCACACGCTCACCCGCATGGCCGGTCTC
AACGCTGCCCGCGAGGCCTTCGACGACACGGCCGGCGCCGCCGAGTACGTGGCCGCCAAC
GGCCTCCGCGACACGGCCGCCATCGCGTCCTCCCGCGCCGCCGAGCTGTACGGCATGGAG
GTGCTCGCCGACGGCATCCAGGACGACTCCGGCAACGTCACGCGGTTCGTGATGCTAGCC
AGGGAGCCCATCGTGCCGCGCAT

Homology of Contig U35_2749 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g33390.1	437	1e-135	protein\|prephenate dehydratase domain containing protein, expressed
Brachypodium v1_2	Bradi5g09020.1	405	1e-139
Arabidopsis v10	AT2G27820.1	424	5e-120	\| Symbols: PD1, ADT3 \| prephenate dehydratase 1 \| chr2:11856808-11858082 FORWARD LENGTH=424