barSeed - Barley Seed Development Database

Probe CUST_27283_PI390587928

Source Contig U35_2751

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27283_PI390587928	Hv_44K_v2	TTTTCTTGTCGTGTCACAGTACGTGTAATAGTGCCAGTTGAGCTGATTAGACCTTAGGGC	333	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_60716.1	1237	2e-24	1130 - 1189	100	60 / 60	plus	ABC06732 ABC06733
MLOC	MLOC_60716.2	1785	2e-24	1512 - 1571	100	60 / 60	plus	ABC06732 ABC06733
JLOC1	JLOC1_39619.1	1750	8e-25	1460 - 1519	100	60 / 60	plus
Harvest21	ABC06733	511	3e-25	119 - 178	100	60 / 60	minus	ABC06733
Harvest35	U35_2751	511	3e-25	334 - 393	100	60 / 60	plus

Contig Sequence (511 bp)

>U35_2751 511 Hv_44K_v2
GTGACATCAGCCTCACCAAGATCGACAGCCGGCCTCACCGGCCCATCCGCTTTGCCGCCG
ACGATGCCGGCAGCGGCACCGCCCCGAAGCAGTTCGAGTACATGTTCTACGTGGACTTCC
AGGCCTCCCTCGCCGACCCGCGCGTGCAGAATGCACTTGCTGAGGTCCAGGAGTTCACGT
CATTCTTGCGCGTGCTCGGGAGCTACCCCATGGACATGACACCTATGGCTGCCGGCGTTG
CCTCATCCGATTCATCGTCGGCTTATTCGTCTTCTTGATTGGATTCGATCGAGTTAATTT
AATCGCCATCGAGTAATTAATCGGGTTCTTCATTTTTCTTGTCGTGTCACAGTACGTGTA
ATAGTGCCAGTTGAGCTGATTAGACCTTAGGGCGATGCTCTGCGCGGGCGCGCCGGCCGC
GCGCAGGCAGCCCGATTTGCCAGCTGTAGATGGGCGTGTTGTTAGATTTTCATGCAATAT
TTTTTTTAATGCAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_2751 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None