barSeed - Barley Seed Development Database

Probe CUST_27282_PI390587928

Source Contig U35_2752

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27282_PI390587928	Hv_44K_v2	GTAGAGCAACAATATCTATACACTTGTCTATAAAGATTCTGTGGACACATGCTCAGATAA	1996	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.737	2.194	1.159	0.826	0.397	0.376
Raw	132.388	251.372	121.931	136.720	22.369	23.804

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_56231.1	1249	2e-24	902 - 961	100	60 / 60	plus	ABC06525
MLOC	MLOC_56231.2	1251	2e-24	508 - 567	100	60 / 60	plus	ABC06525
JLOC1	JLOC1_36349.1	843	8e-25	656 - 715	100	60 / 60	plus
Harvest21	ABC06525	2071	3e-25	1997 - 2056	100	60 / 60	plus	ABC06525
Harvest35	U35_2752	2071	3e-25	1997 - 2056	100	60 / 60	plus

Contig Sequence (2071 bp)

>U35_2752 2071 Hv_44K_v2
GGTTCGCCGCGACGGCCCCCCTCCCTTCTCCTGGCTAAATCTCCCGGCGCCGGTGCAGCT
CGGTCGCTCCGTCGCGCGAGAGGAAGGGGGAAAGATGAAGACGACCAAGGGAGGGAAAGT
CATGAATCCCACCGACGCCTTCCGCAAGGAGCAGCGCAGGAAGGAGCTTAAGCGGAACAA
AAAAGAAAGAAAGAAGGTACGGGAGGTTGGTATTTTGAAAAAGGACCCAAATGCTATAAA
GGATCAGATTGAGAAGTTGGAAAAGATGAAGGCTGATGGTGCTCTGGATAAGGCTAGGAA
ACATAAGAAAAGACAGCTTGAGGATACTTATAATCTTGTTGTGAAGAAAAGGAAGGAATA
TGAAGAAAAGATGAAAGTAAAGGGTGAGCAACCAGTTATGTTCAGCCATCTTGGACCACC
AAAGAGACGGCCTGCAGCAGACGAAGACGATAGAGCTAAAAACCCTATGCCTGAGGATTC
TGTTTACTATCACCCAACCTTGAATCCATCTGGGGCACCACCACCTGGCAAACCTCCTAT
GTACAAATCATCGATAGGACCAAGGATTCCACTGCCTTCTACAGCTGGTGTTGGGGCTCC
ATCTTCCATAACAGAATCTGAAGAAGCAGGTCCTTCCACCATGCCCCCTCCTCCACCGCC
CCCTCCACTGCCAGCCTCTTCAGAACCTTCAGATTTATCTGCCCCTTCTTTACCTTTACC
CCCACCACCACCCCCACCCCCACCTAAGCCTGCTGGCTCTGCAATAGCACCAGGCTTGCC
GCTGCCACCTCCACCTCCTCCTCCTGGTGCACCTCCCAGAGAACCTGTGCTAGATCATAC
ATTACTGCCACCACCTCCACCTCCACCACAGCGGCCTTTGCAACCACCACCTCTACCTGG
TATAAATGTGCTTAATAATAAACAAGCTGTTGGAGAGGGTGCAAGCTCGGCAGATTCTAC
ACAGGCCCCAGTTGTTCTACCTCCACCTCCACCTCCCCCTAGGTTGCCACCGAACTCAAA
TGAAATGCAGGATACTGACAATGCTGCTATGGATACTCCTGTTGTGAAAGAAGATGCCAA
AATTTCAAGGTTCTTACCACCACCTCCACCGCATCCGTCACAGTTACTGCCTTTGCCTCC
AAGGCCTCCAATGATGCCTCCAGTACAGCCTGATATTCTAAGTCCAGGAATGGTCAGATT
TCCTCCACCACCTTCACCACCAGATTCAAGGCCATCATTTATGGTTACTGGTGTTGCAGC
CTGCCCCCCTCCACCTCCTCCAGCATTACCTCCAGCTCAAATGCCAATGGCACCCTTTGG
TGTGCTTCCTGGTCCACCAACAATGCTTAGGCCTCCATTTTTTCCAGGACCCGAATTTGC
TGCTTTTGGCCCAAGGCCGCAGTTACCTCAGCAGCCATCTTACGTCAAATCTGCTGCTTC
AACAGTTGTAAAGAGGCCATTAGCACAACATACTCCTGAACTAACAGCTATGGTTCCTGC
ATCAGTTCGAGTTAAGAGAGAATCAGCTCTCCCTAAACCAAAACCAAAGGCGCAGCAGCA
GCAGCAGTCATCAGCACCATCATATTCTGCTCTGACGCCTTCAGTAACCCCCATAAAATC
TGCAGCGCAGCCTTCACCCTCAGCTTCTAAGCCACAAAGCATTGATGACTCCTACATGGC
ATTCCTGGAGGATATGAAGCAACTGGGTGCCCTCCATGAGTAGGTCGGCATCCAGTCTCT
TCTCCCTAAAGGCTGTCAGCAGCTTGGTCATGAACCTGAACCTGAACATGATTACGTTCT
TTGCATTGTGGCTCACGAATCACTTTCCCTGCTATGATCTTAGAAACCGTTTCTGTTTTT
CCATGAGCAAGCATTTCAGATGTATTCCAGTTTGTAATGGGGAAATAACCATCATCAACA
AATCTTTTCATTGTAGTTGTGCAACACAGCTGTATCGAGTCAAACAATGGAAGCACTTAA
TTGACCGCTCTAGGCAGTAGAGCAACAATATCTATACACTTGTCTATAAAGATTCTGTGG
ACACATGCTCAGATAAAAAAAAAAAAAAAAA

Homology of Contig U35_2752 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g09510.1	559	1e-64	protein\|retrotransposon protein, putative, unclassified, expressed
Brachypodium v1_2	Bradi1g54730.1	550	1e-73
Arabidopsis v10	None