barSeed - Barley Seed Development Database

Probe CUST_27277_PI390587928

Source Contig U35_2757

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27277_PI390587928	Hv_44K_v2	TCTTGGCCGAATCTCCATGGCCTGTAATTAATTAAAGATGGATGGTTAAAGCAGAAAAAA	1334	GeneList: bisque4 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.288	3.062	1.451	0.801	0.482	0.717
Raw	477.606	1782.196	701.206	644.891	126.225	210.477

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_11345.4	1941	3e-21	1779 - 1832	100	54 / 54	plus	ABC08201
JLOC1	JLOC1_7509.3	4914	2e-21	3456 - 3509	100	54 / 54	plus
JLOC1	JLOC1_7509.2	3809	2e-21	2351 - 2404	100	54 / 54	plus
JLOC1	JLOC1_7509.1	3380	2e-21	1922 - 1975	100	54 / 54	plus
Harvest35	U35_2757	1441	3e-25	1335 - 1394	100	60 / 60	plus

Contig Sequence (1441 bp)

>U35_2757 1441 Hv_44K_v2
CTACCTCTTGATTCTTCTCGCACCCTTCTCATCTAGCTGTTGAGTTTGAGCGAGGCCCTG
CCCAAATTAACTCCGGATTGATTGATTAGTTATGACCGTTCTCCCAGGATCACCACTGTA
GGTAATAGGATCATACGGAGTACTACAGTACATACTTCTCCCCTCCGCGCACGTCTCCGG
CGTTCCCACAGCCAGCCGATCGTTGGTACTCACGGTGGTGCAGGCGTCGCCGTACGGTGA
CCTGGAGGAGGTGCTGGCGCGGGCGGCGACGGCGGACCGGACGGTGATCATGACGCAGAT
CAACGCGGCCTGGACCAAGCCGGGCTCCCTGCTCGACCTCTTCTTCGAGAGCTTCCGGAC
GGGGGAGGGCGGCGTGGCGCGGCTGCTCGACCACCTCGTCATCGTCACCATGGACCCGGC
GGCGTACGCCGGGTGCCAGCTCGTGCACCGGCACTGCTACTTCCTCAGGACCACCGGCGT
CGACTACCGCGGCGAGAAGTTCTTCATGAGCAAGGACTACCTCGAGATGATGTGGGGCCG
CAACAAGTTCCAGCAGACCATCCTTGAGCTCGGATACAACTTCCTCTTCACGGACGTGGA
CGTGATGTGGTTCCGTGACCCGTTCAAGCACATCTCCATGGGGGCGGACATCGCCATCTC
CAGCGACGTCTTCATCGGGGACCCCTACAGCCTCGGCAACTTCCCCAACGGCGGCTTCCT
CTTCGTGCGATCATGCAACAAGACCATCGAGTTCTACCGGCACTGGCAGGCCGGACGGTA
CCGCTTCTTCGGCAAGCACGAACAGGACGTGTTCAACCTCATCAAGCACGAGATGACGGA
CCGCCTCGGCGTCGCCATCCAGTTCCTCGACACCACCTACATCAGCGGCTTCTGTCAGCT
CAGCAGGGACCTCAACAAGATCTGCACGCTGCATGCGAATTGCTGCGTTGGGCTTGGGGC
CAAGCTGCATGATTTGAGGAATGTGCTGGATGTGTGGAGGAACTACACGGCGGCGCCGGT
GACCGACAAGAGGGCCGGCAAGTTCCAGTGGAAGGTACCCGGGATATGCATCCACTGATG
CAACTGCTGTTGGTTGGATGAGTTGCATGCATGGTTCCATGCATTTGGTTGCCCATTCTT
TCTCTTCTTCTTGCTTTGCCTTCTCCTTTTCTCGTGGAAAGAGATGGGAGGGGATTGAGA
GGGGTACGTAGCATCGATTCATTTTGTGGAATTAATTCAGCTAGATGATTAGTAAGTTAT
TATATATGTATGTACACAAATATACACAGAGCGGTAGTACTCCAGTGTGCGTGCAGCACA
TGCATGTATCCTGGTCTTGGCCGAATCTCCATGGCCTGTAATTAATTAAAGATGGATGGT
TAAAGCAGAAAAAAAAAAAAAAAGCACAAGTGTTGTTTGTTTGTAAAAAAAAAAAAAAAA
A

Homology of Contig U35_2757 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g63270.1	392	0.0	protein\|regulatory protein, putative, expressed
Brachypodium v1_2	Bradi1g01750.1	379	0.0
Arabidopsis v10	AT1G14590.1	386	2e-99	Nucleotide-diphospho-sugar transferase family protein \| chr1:4998957-5000617 REVERSE LENGTH=386