barSeed - Barley Seed Development Database

Probe CUST_27274_PI390587928

Source Contig U35_2760

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27274_PI390587928	Hv_44K_v2	TGAAGCGTCCTCAACTGATGTTTAAACATAGCTGGGCCACATTTACGCCCAAAATCTCGT	1123	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.813	1.637	1.127	0.778	0.202	0.378
Raw	71.815	104.024	60.586	72.001	5.056	12.665

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_22366.1	1239	8e-25	1142 - 1201	100	60 / 60	plus
Harvest21	ABC06041	1219	3e-25	1124 - 1183	100	60 / 60	plus	ABC06041
Harvest35	U35_2760	1219	3e-25	1124 - 1183	100	60 / 60	plus

Contig Sequence (1219 bp)

>U35_2760 1219 Hv_44K_v2
GGGAAGAAAAACCCTANACTCAAAGCCCCGCAGGCCGCAGCCCGAGCCGTCGCGAAGCGT
GAAGAAGACATGGGGCGGCCGTACGCAGTCAAGGGGAAGAAGAAGCGGAAGCTGGAAGGC
GGCGAAGCCTCGCGCGCCCCTCCGGTCGACGCCGAGGAGGTGGAGCTAGAGGGCAAGGAA
AATGAGGAGGTGACGGAGGGGGAGGCGGCGCCAGAGGCCTTTGCCGAGGAGGTGGGGGAT
GGGATCCCCATCGTGCCCCGCCCGCTGGACAGTAAGCGGCGGCCGGGCGCTATCTTCGTA
CTTGAGAGGGCCTGCCTCGAGGTCGGCAAAGTCGGCAAGGGTATGCAAATCTTGAATTCG
GATGATCACGCTAATTATTTAAGGAAGCAGAATCGCAATCCAGCTGATTATAGGCCTGAT
ATCATCCACCAGGCACTACTAGCAATATTTGATAGCCCCCTAACTAAGGCTGGCAGGTTA
CAAGCTGTTTATGTTAGGACTGAAAAGGGAGTGTTGTTTGAAATCAAGCCTCATGTTCGC
ATGCCACGGACGTTCAAGCGTTTCTGTGGTTTGATGTCACAGTTATTGCAAAAGCTGAGC
ATCACGGCAGTTGGGAAGCGTGAGAAGCTCCTTAATGTTATTAAAAATCCTGTTACCCAG
TATCTACCTGTTGGCACACGGAAGATTGGCCTTTCATATAGTGCGGAGAAGGCAGTTAAT
TTGTGTGACTATGTTGCTAAGTCCAATGATGATGAACCTCTTGTGTTTGTGGTTGGTGCC
ATGGCCCATGGAAAGGTTGACAAGGAATACTCAGATGATTACATACAGATTAGCGGTTAC
CCTCTCAGTGCTGCCTGTTGCCTGAATCGAATATGCAGTGCCTTGGAGCAGAAATGGAGC
ATCCAGTGAAGGGAAGATTGAAAACGAATATTACAGCTTTGTGATCAGATTTTTATGTAC
CCATTAGCTCTAATAGTCTCGTTGTGCCTTTTCAAGTCTTATATGTCTACCGTATTAGTT
TTGTCGGAGACATGAATCAGTGGCTGTAAAAGTATTAACATTGAATGTTTCAAGTGCTTA
TGGTCCTTGCAGTCAAGTCATTTTTGGTGAAATTTACTTTGCTTGAAGCGTCCTCAACTG
ATGTTTAAACATAGCTGGGCCACATTTACGCCCAAAATCTCGTGGGCGTGTGTTGGTTCG
CTGCGCGCAGCCAGAGGCG

Homology of Contig U35_2760 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g18830.1	285	8e-147	protein\|ribosome biogenesis protein NEP1, putative, expressed
Brachypodium v1_2	Bradi3g10610.1	322	2e-143
Arabidopsis v10	AT3G57000.1	298	1e-93	nucleolar essential protein-related \| chr3:21092610-21094109 FORWARD LENGTH=298