- Probe CUST_2726_PI390587928
- Source Contig U35_14201
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_2726_PI390587928 | Hv_44K_v2 | AAGATGTCTGCACTGTACCTCCAAGTCAGTATTGTGAGCCAGGCTCTTATCTTTGTGACT | 363 | GeneList: None MasterList: None |
Probe Values
This probe has no recorded values for this experimentProbe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_75846.4 | 3380 | 2e-24 | 2462 - 2521 | 100 | 60 / 60 | plus | ABC00002 ABC00268 ABC00680 ABC37456 |
| MLOC | MLOC_75846.3 | 3480 | 2e-24 | 2622 - 2681 | 100 | 60 / 60 | plus | ABC00002 ABC00268 ABC00680 ABC37456 |
| MLOC | MLOC_75846.2 | 3314 | 2e-24 | 2461 - 2520 | 100 | 60 / 60 | plus | ABC00002 ABC00268 ABC00680 ABC37456 |
| MLOC | MLOC_75846.1 | 3076 | 2e-24 | 2473 - 2532 | 100 | 60 / 60 | plus | ABC00002 ABC00268 ABC00680 |
| MLOC | MLOC_75846.5 | 3497 | 2e-24 | 2453 - 2512 | 100 | 60 / 60 | plus | ABC00002 ABC00268 ABC00680 ABC37456 |
| JLOC1 | JLOC1_50591.1 | 3489 | 8e-25 | 2376 - 2435 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC30452 | 669 | 3e-25 | 90 - 149 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC00680 | 3411 | 3e-25 | 2417 - 2476 | 100 | 60 / 60 | plus | ABC00680 |
| Harvest21 | ABC00268 | 523 | 3e-25 | 451 - 510 | 100 | 60 / 60 | plus | ABC00268 |
| Harvest21 | ABC00002 | 518 | 3e-25 | 364 - 423 | 100 | 60 / 60 | plus | ABC00002 |
| Harvest35 | U35_30507 | 669 | 3e-25 | 90 - 149 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_14211 | 3451 | 3e-25 | 2458 - 2517 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_14202 | 523 | 3e-25 | 451 - 510 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_14201 | 518 | 3e-25 | 364 - 423 | 100 | 60 / 60 | plus |
Contig Sequence (518 bp)
>U35_14201 518 Hv_44K_v2 GCTTGGCTTTTTGCTTATTGCCTTGATCTGGAAATTTGATTTCGCTCCCTTCATGGTCCT TATCATTGCCATTCTCAATGATGGTATGTTTTTTTTGGTTTCCCGTTAGTAGCCATGCTC ATGTCAGCATCACTTCTCATATTCATATGAAAAATTGCAGGCACTATCATGACGATATCC AAGGACAGAGTTAAGCCATCTCCCTTACCCGACAGCTGGAAGCTCAATGAAATCTTCGCC ACTGGTGTTGTGCTCGGAACCTACCTTGCTCTGATGACAGTGGTCTTCTTCTGGATCATC CACAGGACCGACTTCTTCACAAACAAATTCGGTGTCAGGTCAATCAGGGAAAATGAAACT GAGAAGATGTCTGCACTGTACCTCCAAGTCAGTATTGTGAGCCAGGCTCTTATCTTTGTG ACTCGTTCTCGCAGCTGGTCCTTTGTTGAGCGCCCTGGTTTCCTNTTGGTTATCGCCTTC CTTCTCGCGCAATTGTTGCGACACTCATTGCTGTGTAT
Homology of Contig U35_14201 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os04g56160.2 | 538 | 2e-54 | protein|plasma membrane ATPase, putative, expressed |
| Brachypodium v1_2 | Bradi5g24690.1 | 952 | 9e-57 | |
| Arabidopsis v10 | AT3G42640.1 | 948 | 3e-51 | | Symbols: AHA8, HA8 | H(+)-ATPase 8 | chr3:14724309-14728062 FORWARD LENGTH=948 |