- Probe CUST_27263_PI390587928
- Source Contig U35_45211
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_27263_PI390587928 | Hv_44K_v2 | CAGCCTTTGAGACGAAGATCTACCATCGTCGCATCTCTGTAAAGTCTACATGTATGTGGT | 96 | GeneList: darkslateblue MasterList: None |
Probe Values
3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
---|---|---|---|---|---|---|
Normalized | 1.563 | 2.351 | 0.934 | 1.454 | 0.498 | 0.444 |
Raw | 21.691 | 48.318 | 18.570 | 46.234 | 3.297 | 3.234 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
MLOC | MLOC_39100.1 | 894 | 2e-24 | 52 - 111 | 100 | 60 / 60 | minus | ABC43750 |
JLOC1 | JLOC1_25480.1 | 1181 | 8e-25 | 1113 - 1172 | 100 | 60 / 60 | plus | |
Harvest21 | ABC43750 | 514 | 3e-25 | 97 - 156 | 100 | 60 / 60 | minus | ABC43750 |
Harvest35 | U35_45211 | 514 | 3e-25 | 97 - 156 | 100 | 60 / 60 | minus |
Contig Sequence (514 bp)
>U35_45211 514 Hv_44K_v2 TTTTTTTTTTTTTTTTTGGTTTTAAAACATTTTATTTATGCAGAGGCTGGGTAAAATAGT ATCTTCACAATATTAATATATTCTTCTATTTCTGATACCACATACATGTAGACTTTACAG AGATGCGACGATGGTAGATCTTCGTCTCAAAGGCTGCCGTGTGTGAGGGAAAACTGATCT GCAACATGCTGGGGGTTTCTTCACAAACGGGCTATACGCTGCAACGAACCAACCGCATTT GCGGCTGCTCTCTTGGCCTCATATCTTGCCACTACAGGGTGCAAAGTGAAACCAAGTGGT AACCTTGAAGCGCTGGCTCACACTTTGCTTCAAATGATAAATACCTTCCAAGTTTACGCA CTTTATCATAGATGAGATCAGCTGCTCTAGGAGGCAAGTCGCTCCTCAAGACTCCCTCTC TCACTTTGGCGTGTGTCTCGGCCTCGTGCTGGAACATGGAGACTAGCTGCTGGAGCTCCA ACTTTCTCACTTCGACCTGCTGATCACTGATCGG
Homology of Contig U35_45211 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | None | |||
Brachypodium v1_2 | None | |||
Arabidopsis v10 | None |