barSeed - Barley Seed Development Database

Probe CUST_27258_PI390587928

Source Contig U35_45218

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27258_PI390587928	Hv_44K_v2	GGCGGGCCTGCGCGGGCTCAACAACCTCGGCAACACCTGCTTCATGAACTCCGTGCTGCA	169	GeneList: skyblue3 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.400	1.199	1.212	1.024	0.414	0.351
Raw	28.125	32.013	32.806	40.851	5.382	4.756

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK360035	1330	2e-24	690 - 749	100	60 / 60	plus	None
MLOC	AK353947	1076	2e-24	576 - 635	100	60 / 60	plus	None
MLOC	MLOC_38901.3	1646	2e-24	101 - 160	100	60 / 60	plus	ABC43772
MLOC	MLOC_38901.1	1896	2e-24	117 - 176	100	60 / 60	plus	ABC43772
MLOC	MLOC_38901.4	1972	2e-24	76 - 135	100	60 / 60	plus	ABC43772
MLOC	MLOC_38901.2	2854	2e-24	117 - 176	100	60 / 60	plus	ABC43772
JLOC1	JLOC1_25333.3	1999	8e-25	91 - 150	100	60 / 60	plus
JLOC1	JLOC1_25333.2	1932	8e-25	109 - 168	100	60 / 60	plus
JLOC1	JLOC1_25333.1	1807	8e-25	109 - 168	100	60 / 60	plus
Harvest21	ABC43771	229	3e-25	170 - 229	100	60 / 60	plus
Harvest21	ABC21032	1016	3e-25	185 - 244	100	60 / 60	plus
Harvest35	U35_45218	229	3e-25	170 - 229	100	60 / 60	plus
Harvest35	U35_9673	1016	3e-25	185 - 244	100	60 / 60	plus

Contig Sequence (229 bp)

>U35_45218 229 Hv_44K_v2
TCGTCCTGCCCATCCACGGCTCCACCCCCCGTCGCTCGCCCCACCGTCCGGTCGATCCCC
CGCCGCGCCCCGCAAGCGCCGGCGCGTCATACCGCGCCTGGGCGCCAACCGGCCGAGGTC
CGCTCGTGCGATCCGCCGATCCCACCACCTCCGCGTCCGCCGCCGAGCCGGCGGGCCTGC
GCGGGCTCAACAACCTCGGCAACACCTGCTTCATGAACTCCGTGCTGCA

Homology of Contig U35_45218 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None