barSeed - Barley Seed Development Database

Probe CUST_27252_PI390587928

Source Contig U35_21264

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27252_PI390587928	Hv_44K_v2	GCGGCGGCGAGCAGCCCAAGCTCGCGCGCAGCCTCGTCATGCTGCTCGTCAACCTCACCC	369	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK366560	1227	2e-24	368 - 427	100	60 / 60	plus	ABC13948
MLOC	AK362168	1442	2e-24	407 - 466	100	60 / 60	plus	ABC13948
MLOC	MLOC_16500.1	534	2e-24	377 - 436	100	60 / 60	minus	ABC13948
JLOC1	JLOC1_11362.1	608	8e-25	50 - 109	100	60 / 60	plus
Harvest21	ABC14786	428	1e-24	370 - 428	100	59 / 59	plus
Harvest35	U35_21264	429	3e-25	370 - 429	100	60 / 60	plus

Contig Sequence (429 bp)

>U35_21264 429 Hv_44K_v2
GAGGGAAAACCCCAAGCAAAAGAACCACCTTTCCTCCTCCGCCGCCGCCGCCGCCGTCCC
CTTCCGCCGCCATGGCCGACGAGCTCGACGAACTCATCGACTTCCTCTCCAACGGCTCCC
CTCAGGTGCGCGGCGCCGCGGCGGACATCGTGCGGGGGCTCACCGGGGACAGCGACGGGC
TTCGCTCCCTCGCGGCGCGCGCCGACCGCGCGCTGCCGGCGCTGCTCCGGCTGCTCGCGT
CCGTGGGGGCCGGCGGCGCGGGCGAGGCGGCGGCCGACTCGCTCGTCAACCTCAGCCAGG
ACGCCGAGCTCGCCGCGCGCCTCGTGGCGCTCGGCGCCGTCGCGGCCGCCATGGACGTGA
TGGTCAAGCGCGGCGGCGAGCAGCCCAAGCTCGCGCGCAGCCTCGTCATGCTGCTCGTCA
ACCTCACCC

Homology of Contig U35_21264 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None