barSeed - Barley Seed Development Database

Probe CUST_27245_PI390587928

Source Contig U35_33241

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27245_PI390587928	Hv_44K_v2	AACTAGAGACATTCAAGTCAGGGTGTTATACTGTCGCCTGCCAACGAGTGATGATATCAC	293	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.142	1.517	1.200	0.909	0.363	0.416
Raw	2094.170	4263.067	2996.750	3488.513	508.717	626.841

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_61073.2	2907	2e-24	30 - 89	100	60 / 60	minus	None
MLOC	MLOC_61073.1	2970	2e-24	89 - 148	100	60 / 60	minus	None
JLOC1	JLOC1_39878.4	3194	8e-25	2808 - 2867	100	60 / 60	plus
JLOC1	JLOC1_39878.3	3205	8e-25	2819 - 2878	100	60 / 60	plus
JLOC1	JLOC1_39878.2	2955	8e-25	2569 - 2628	100	60 / 60	plus
JLOC1	JLOC1_39878.1	2850	8e-25	2464 - 2523	100	60 / 60	plus
Harvest35	U35_33241	370	3e-25	294 - 353	100	60 / 60	plus

Contig Sequence (370 bp)

>U35_33241 370 Hv_44K_v2
TCGATGAGCTAAGATCGAACCTGATCCGGAACATCGTGGGGAACTACCAGGAAACGGGGT
TCTTCTGGGAGAACTACGACCAGAAGAACAGAGGGAAGGGGAAGGGCGCTAGGTCGTTCA
CCGGATGGACGTCGCTCGTCGTCCTGATCATGGCCGAGTCCTACCCATCGTTGCACAGAT
AGATAGATAGACAGATGTATCGGTGTATCATCATGGCCGAGTCCTGGTCTGGTCTCTCTA
CTAGTGTAACATGTTTTCCCTGGGCTTCGGTAGCTCGAGATGCCCAAGAAAGGAACTAGA
GACATTCAAGTCAGGGTGTTATACTGTCGCCTGCCAACGAGTGATGATATCACGACGCCT
TCTTTTTTGC

Homology of Contig U35_33241 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None