barSeed
Links

Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_27239_PI390587928Hv_44K_v2AACAACTAGCTCAAATGGAAGCAATCAGAACGTTGGTGTTGCAGACCGTACCATCCATGT535GeneList: black
MasterList: Hordein_Function_Probe_Module



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 0.0100.0100.3061.7652.8764.103
Raw 26.34136.9362671.95522313.15013157.78320559.667



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_45609.15643e-21227 - 2869758 / 60minus ABC00518 ABC00817 ABC28944 ABC32433 ABC43834
JLOC1JLOC1_29606.15802e-21243 - 3029758 / 60minus
Harvest21ABC437866013e-25536 - 59510060 / 60plus
Harvest21ABC527316006e-22348 - 4079758 / 60plus
Harvest21ABC527226436e-22546 - 6059758 / 60plus
Harvest21ABC0081716136e-221156 - 12159758 / 60plusABC00817
Harvest35U35_452226013e-25536 - 59510060 / 60plus
Harvest35U35_505356006e-22348 - 4079758 / 60plus
Harvest35U35_505296436e-22546 - 6059758 / 60plus
Harvest35U35_2211476e-22832 - 8919758 / 60plus



Contig Sequence (601 bp)

>U35_45222 601 Hv_44K_v2
ACTAGTTAACACCAATCCACCATGAAGACCTTCCTCATCTTTGCACTCCTTGCCATTGCG
GCAACAAGTACCATTGCACAACAACAACCATTTCCACAACAACCCATCCCACAACAACCA
CAACCATACCCACAACAACCCTTACCACCGCAACAACCATTTCCACAACAAAAATATCCC
GAGCAACCACAACAACCATTTCCTTGGCAACAACCAACTATTCAGCTATATCTCCAACAA
CAACTGAATCCGTGCAAGGAGTTTCTCTTGCAACAGTGCAGGCCTGTGTCATTGTTATCT
TACCTCTGGTCAAAGATCTTGCAACACAGCAGTTGTCGGGTGATGCAGCAACAATGTTGC
CTGCAATTGGCACAGATCCCTGAACAATACAAATGCACAGCAATCGATAGCATTGTGCAT
GCCATCTTCATGCAGCAAGGCCAAAGACAAGGCGTGCAGATCGTGCAACAACAACCTCAG
CCGCAACAGGTGGGTCAATGTGTGCTCGTCCAGGGTCAGGGCGTCGTCCAACCGCAACAA
CTAGCTCAAATGGAAGCAATCAGAACGTTGGTGTTGCAGACCGTACCATCCATGTGCAAC
T



Homology of Contig U35_45222 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None