barSeed - Barley Seed Development Database

Probe CUST_27232_PI390587928

Source Contig U35_21273

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27232_PI390587928	Hv_44K_v2	GTTGAGTCGTGCAGAATTTGAACAGGTGAACCATGTGATCTTTGAGAAATGTGAGAGGAT	1097	GeneList: black MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.454	0.426	0.715	1.781	4.921	7.127
Raw	3.571	4.373	10.634	45.921	40.986	66.745

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_67581.1	2283	2e-24	957 - 1016	100	60 / 60	minus	ABC12708
JLOC1	JLOC1_44639.1	2236	8e-25	1232 - 1291	100	60 / 60	plus
Harvest21	ABC14817	1157	3e-25	1098 - 1157	100	60 / 60	plus
Harvest35	U35_21273	1157	3e-25	1098 - 1157	100	60 / 60	plus

Contig Sequence (1157 bp)

>U35_21273 1157 Hv_44K_v2
GGCGCACCCTCGGTTCGTTTTGCGCTGCCGCGGAGGAGCATCGACGAGCAAGGCCGGCGA
AGAGAGTCCACTGCGCGCATCCCTCGCCCTTCCCGGATGGCTGAGCAATTCTACACAGTG
GCATCTGACAGCGAAACCACCGGGGACGACAAAGCTCAACAATCATTCCCTGATGTTGCT
ATCGGCATTGATATTGGCACTTCAAGATGCAGTGTTGCAATTTGGAACGGTCATCAAGTG
GAGCTGCTGAAAAACACTCGCAGCCAGAAAGGGATGAGGTCATATGTCATGTTCAAAGAT
GACACCCTTTCAGCTGGTGTTACTGGAGGAGCAACCAAGGAGCACGCACACGAGGAAAGA
GATATCTTGTCAGGAAGTGCAATATTTAACATGAAGCGTTTAATCGGGAGAATGGACACA
GATGAAGTGGTTCAAGCTAGCAAGACTCTCCCTTTCCTTGTGCAGACACTGGGTATTGGT
GTGAGACCATTTATTGCAGCTCTGGTCAACAATATGTGGCGCTCCACAACTCCTGAGGAA
GTTCTTGCCATCTTCCTACTTGAATTGAAGGCCCTGGTGGAAATGCATCTCAAGCATCCA
GTCAGGAATGCTGTTCTAACCATCCCAGTTGCATTCAGTCGCTTCCAGCAGACCAGGATT
GAGAGAGCATGTGCGATGGCTGGACTGCATGTGCTGAGGCTTATGCCAGAGCCTACTGCT
GTCGCTCTTTTGTATGCTCAGCAGCAGCAACAACTTATGCATGATAACATGGGAAGCGGC
ATTGAGAAAATCGCCCTGATATTTAACATCGGCGCTGGTTATTGTGACGTTGCAGTGTCT
GCCACTGCTGGAGGTGTTTCTCAAATAAGAGCACTCTCAGGTTGCACCGTTGGTGGAGAG
GACATCCTTCAGAATGTAATGCGCCACCTTCTACCCAATTATGATAACTTATGTGACAAT
GCTGGTCAAACTACGGACAGGATCAAGTCAATGGGTCTACTGCGGATGGCAACTCAGGAT
GCGATTCACAAACTGGCATCCCAGGAAAGCACTGAGATCAATGCAGACTTGGGTAATGGC
CTGAAAGTCTGCAAGCTGTTGAGTCGTGCAGAATTTGAACAGGTGAACCATGTGATCTTT
GAGAAATGTGAGAGGAT

Homology of Contig U35_21273 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g11910.2	579	0.0	protein\|DnaK family protein, putative, expressed
Brachypodium v1_2	Bradi1g69700.1	579	0.0
Arabidopsis v10	AT2G32120.1	563	1e-152	\| Symbols: HSP70T-2 \| heat-shock protein 70T-2 \| chr2:13651720-13653411 REVERSE LENGTH=563