barSeed - Barley Seed Development Database

Probe CUST_27231_PI390587928

Source Contig U35_21274

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27231_PI390587928	Hv_44K_v2	TTAAGTTAACGACATGCCTTAGGTTGCAAGAGTTTCTTGCTGGTCGCATGCGGGATGTAA	1434	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.417	2.343	1.367	0.846	0.368	0.457
Raw	1297.650	3327.326	1667.250	1670.036	245.307	334.639

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK360454	2785	2e-24	2602 - 2661	100	60 / 60	plus	ABC14405
MLOC	MLOC_58199.3	2432	2e-24	2247 - 2306	100	60 / 60	plus	ABC14405
MLOC	MLOC_58199.2	2591	2e-24	2402 - 2461	100	60 / 60	plus	ABC14405
MLOC	MLOC_58199.1	2543	3e-21	2490 - 2543	100	54 / 54	plus	ABC14405
JLOC1	JLOC1_37789.2	1766	8e-25	1585 - 1644	100	60 / 60	plus
JLOC1	JLOC1_37789.1	2750	8e-25	2569 - 2628	100	60 / 60	plus
Harvest21	ABC14405	1510	3e-25	1435 - 1494	100	60 / 60	plus	ABC14405
Harvest35	U35_21274	1510	3e-25	1435 - 1494	100	60 / 60	plus

Contig Sequence (1510 bp)

>U35_21274 1510 Hv_44K_v2
GGCTTGAAGAGAAGTGAATGGTGAAGAGAATGGCGATCCTGCTTGTTCCACCCCTTTGCG
AGAAAGTAAGAAATGCAAGGACCTGCTGTGAATGCTGTGGAGAATGTGGTGTGTGCAGAT
CTTGATGAAAATCATCCTGTGGTCGAACAATCAGAAACTGGGTTAGCTGTAGGAAAACCG
AACACAACAACATCTGTAGAAATTCCTGACATCGAGGAACAAGAGTCACTGGAACCATTG
ACTCCAGAGCCCTTGCGAGAGGGAGTCTCAGGGTTACTAGAAAAATTTATGGTTGCAACA
CCTGCTCAAAATGAGAAGCGCCAGGTTACCAGAAAAAGGAGGAAGGGGTTCCAGGATGCA
TACGAGCACAATAAGAGAAGAGTTTGGGTAGTGTGGGATGATAAGGTCCTCCTTGATAAT
GACACGATGAGAGAAATGGTAGATGGTGTTGGTTTAGAGGATCTAGTCTGCAAAAGAAGG
AAGGCTCCTCACACTCGCCATCAGATTTGGAGGGACCCAATATTTCGTTCTCTGCCGGAT
ACTTTCATGGAGCCAATTATTCAATATTCGACTACAGTGCGCCTTAATTCTACTACAGCT
GGTGCCTCATGCGGGGAATCCGTTAAAGCAAAGAAGTGTCTTTCATATGAACCTGCTGAA
TCCAGCAATCCCCACAAGGAAGCTGCAAATGAAGAAAGGGAATGTGTCCCAGATGAAGTG
ATAAATGGCATCTGGACTCCTGTTGGGTGCTACAATCAAACTCAGCAAAGTCAAGATGCT
TGTGAGTGCAATGATGATACACCCTATGAGAAGAACAGCACATTAGTCAATGGAAATGAA
CCAGGGTTGCCAGAAGAGAGATTGTATGAATCAACCAGTCATAGTGCATTGCGCAATGAA
TCGTTGACTGCTGATATAGATGCGGATATTCCTATGGATGAAGAGCATGCCGCCAGAGAT
GAAGATTTCCCGCTTTCAACAAGAACTAGGGCAGTAGCAAAGTGCCTCCATCAGCTATTC
TTGGACCAGAAGTGCCAGCAGCAAACTGATGTCCCCGTGACGCTCGGCCAAGCCCTCGAA
GGCAGCAAGAGGAAAACCACAGCAAGATTCTTCTATGAAACTCTGATCCTCACGAGCCGT
GGGTTGATAGACGTGAATCAGGAGAAGCCCTATGAGAACATCACAATCTCTGCGACCCCA
CAACTCGACGCGGTGCTGCAGAATCCAGTGCCCCCTTCAACTTCTTAGCAGCGGCATGTC
CCGTAGGTGGGTAGTTTTAGGACAAGAGGACTGGAAGTTTCAGATTTATGCTATATCCCG
TAGCATCATCTCGAGGGTATGTACTGGTGGCAGGCCAGTTGTATATATGGATCGTTCATT
CGTTTGTTGGTATGGGCCAGGCTTATGTAGAGAGAGTAATAGGATGCTGGTCGGTTAAGT
TAACGACATGCCTTAGGTTGCAAGAGTTTCTTGCTGGTCGCATGCGGGATGTAAGTTAGC
TGATGAGGAG

Homology of Contig U35_21274 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g41110.1	750	4e-77	protein\|Rad21 / Rec8 like protein, putative, expressed
Brachypodium v1_2	Bradi5g13990.1	742	5e-121
Arabidopsis v10	None