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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_27222_PI390587928Hv_44K_v2ATTCCTCTGACCCATCTCTCTTGAGCACTGATGTATCTCCTGTTGAGAAGAGATTGAAAT677GeneList: brown4
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 1.7001.1841.3690.7960.5270.438
Raw 49.13045.48853.62945.38210.89910.393



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_59852.126957e-231536 - 15969860 / 61minus None
MLOCMLOC_59852.333007e-231858 - 19189860 / 61minus None
MLOCMLOC_59852.230567e-231536 - 15969860 / 61minus None
JLOC1JLOC1_38980.430664e-231456 - 15169860 / 61plus
JLOC1JLOC1_38980.329924e-231418 - 14789860 / 61plus
JLOC1JLOC1_38980.230204e-231410 - 14709860 / 61plus
JLOC1JLOC1_38980.129574e-231021 - 10819860 / 61plus
Harvest35U35_332557403e-25678 - 73710060 / 60plus



Contig Sequence (740 bp)

>U35_33255 740 Hv_44K_v2
CCTTCCAGATGATGCTCGAGCGGCCGCTCGTCCCAAGGATAGGAAGAGAAAATCATGCCA
GGAAAATGCTGGAAATTTGACTAACGCTTTACCCGATGATGTTTTGGAAAATATGTTCGC
GTCGCTCGCAATCCAAAATTCTAGAGTGGCAAGTACTGCTTCCACGAGATCGGGGAAAGG
CTCAGTTATTATTCTTGATGACAAAATTCTTGTTGAAGGCGATTCAGATTGCACCACTTG
CACTGACTCAAGATCAGAGGTATTCATTGAAAGAGTAAATGAACTGTTGCGGCGCCATGA
TGGAACTGGTGTTCGAGTGTTTGAGGTTTATTTTGAATTGAACTCCACTCACGCTGCCCA
CCTTGACAAATGGGTCCAGTTTGCGTCAGAGGCGGGTGCATAAGATGTGATGCTTAGCTT
GTGTAAAAATATGACATCTTGTCCAGCGGCCGCTGAGCGCGCTTGTCGTACTAACAAGGA
CGAGCATCCGACGTGGGAGATGTCATATGGCGATGTGAATCGAAAGAATCCTGCTGGCAG
ATCAAGTGACACTCTAGCTATGGCCGAGGGCATAGCTAAAAGAGCAAGATTTGAGAGCTC
TGCAGCTTCGAATCAGCTAGTTCAGGGAATACCTGATTATTCTGACATGCAGATTGAAAA
TGACGCCAATATGGGTCATTCCTCTGACCCATCTCTCTTGAGCACTGATGTATCTCCTGT
TGAGAAGAGATTGAAATGAT



Homology of Contig U35_33255 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None