- Probe CUST_27221_PI390587928
- Source Contig U35_45230
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_27221_PI390587928 | Hv_44K_v2 | GCTCTTTTTCAATGATGCGGTGAATTGTTTTCCTTTCATGAACAGATATATTTCCTTCGT | 117 | GeneList: plum1 MasterList: None |
Probe Values
3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
---|---|---|---|---|---|---|
Normalized | 0.763 | 0.637 | 0.958 | 2.390 | 2.582 | 1.523 |
Raw | 3.047 | 3.169 | 8.678 | 33.108 | 11.394 | 8.239 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
MLOC | MLOC_3320.1 | 585 | 7e-23 | 483 - 542 | 98 | 59 / 60 | plus | ABC43812 |
Harvest21 | ABC43812 | 439 | 3e-25 | 118 - 177 | 100 | 60 / 60 | minus | ABC43812 |
Harvest35 | U35_45230 | 439 | 3e-25 | 118 - 177 | 100 | 60 / 60 | minus |
Contig Sequence (439 bp)
>U35_45230 439 Hv_44K_v2 TTTTTTTTTTTTTTTTTGATCCAAACGACTGTACTCCTTCTGTCTTAAAATAAGTGATAA AAAAATTACACTAATTTAATATAAATTTTGTATTAAAACAGCTACACTTATTTTGAAACG AAGGAAATATATCTGTTCATGAAAGGAAAACAATTCACCGCATCATTGAAAAAGAGCACA CACTCAAAAATCAAAACCTCTGAACACTTCAATACCGCCTGTTTTGGAAAAACTGGCTCA TTGAGTCGTACCCCAGCGCGCGGTGCAACAACAACGGCACCTGCTGCGCACCGTCGTTCC TGCTCGCCGCGCGTTCCAGCACACCCGAGCCGGACACCCGGCTCGTCTGGCGCGCGGGGC CAACGATACCCGCAGCCGCGGGAAGCGCCACCTTGAGCACTTTCTTGCACCCGCCGCACC GTAGCCTGATGTTTCCCCT
Homology of Contig U35_45230 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | None | |||
Brachypodium v1_2 | None | |||
Arabidopsis v10 | None |