barSeed - Barley Seed Development Database

Probe CUST_27215_PI390587928

Source Contig U35_45238

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27215_PI390587928	Hv_44K_v2	GCAGATACTTTTCGACGACGAAGACCAACACATGGATAACGTTAGCCTTGGAAATGTGAA	438	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK358689	2285	2e-24	934 - 993	100	60 / 60	plus	None
MLOC	MLOC_6922.4	1423	2e-24	257 - 316	100	60 / 60	minus	None
MLOC	MLOC_6922.2	1468	2e-24	293 - 352	100	60 / 60	minus	None
MLOC	MLOC_6922.3	1536	2e-24	273 - 332	100	60 / 60	minus	None
JLOC1	JLOC1_4552.2	3234	8e-25	1126 - 1185	100	60 / 60	plus
JLOC1	JLOC1_4552.1	3732	8e-25	1090 - 1149	100	60 / 60	plus
Harvest21	ABC43840	498	3e-25	439 - 498	100	60 / 60	plus
Harvest35	U35_45238	498	3e-25	439 - 498	100	60 / 60	plus

Contig Sequence (498 bp)

>U35_45238 498 Hv_44K_v2
GGCAAACCTCAAGACACTTGACCTCTCCGGCAACAATTTCTATGGTGAAATCCCACCATC
CGTGGGCCACCTTGAGAGCCTCCAGTACCTGAGGCTCAACAACAACACCCTGTCCGGTCC
ATTCCCTACAGCGTCGACTAATCTGTCGCACCTTGTTTTCCTCGATTTGTCATACAATAA
CCTGAGTGGCCCGATACCGGGATCTTTGGCAAGAACATACAACATAGTTGGAAATCCTCT
CATATGCGCTGCGAATACGGAGAAAGATTGTTACGGGACTGCGCCGATGCCAATGACCTA
CAACCTTTCACAAGGCACTCCGCCAGCGAAAGCTAAAAGCCACAAGTTCGCAGTTTCATT
TGGTGCTGTAACTGGTTGCATGATCTTCCTCTTTCTTTCCGCCGGATTCTTGTTCTGGTG
GAGACAGCGTCGGAACCGGCAGATACTTTTCGACGACGAAGACCAACACATGGATAACGT
TAGCCTTGGAAATGTGAA

Homology of Contig U35_45238 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g16330.1	641	1e-84	protein\|BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed
Brachypodium v1_2	Bradi1g43690.1	630	4e-94
Arabidopsis v10	AT5G16000.1	638	4e-55	\| Symbols: NIK1 \| NSP-interacting kinase 1 \| chr5:5224264-5227003 FORWARD LENGTH=638