barSeed - Barley Seed Development Database

Probe CUST_27214_PI390587928

Source Contig U35_45239

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27214_PI390587928	Hv_44K_v2	AGTTATGGGGACTTTTGGCTATGTAGCCCCTGAATACATAAATACTGGACTGCTAAATGA	358	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK359804	2181	7e-23	1415 - 1474	98	59 / 60	plus	ABC17717
MLOC	MLOC_57405.2	1331	7e-23	25 - 84	98	59 / 60	minus	None
MLOC	MLOC_57405.1	1834	7e-23	51 - 110	98	59 / 60	minus	None
JLOC1	JLOC1_37196.4	1575	4e-23	1424 - 1483	98	59 / 60	plus
JLOC1	JLOC1_37196.3	1560	4e-23	1409 - 1468	98	59 / 60	plus
JLOC1	JLOC1_37196.2	1578	4e-23	1424 - 1483	98	59 / 60	plus
JLOC1	JLOC1_37196.1	1450	4e-23	1296 - 1355	98	59 / 60	plus
Harvest21	ABC43844	421	3e-25	359 - 418	100	60 / 60	plus
Harvest35	U35_45239	421	3e-25	359 - 418	100	60 / 60	plus

Contig Sequence (421 bp)

>U35_45239 421 Hv_44K_v2
GGGTCGAAGTTGAGGCCATTGGTCATGTTAGGCATAAGAATCTGGTGCGACTTCTGGGTT
ACTGTGTCGAGGGAAGCCACAGGATGCTTGTCTATGAATACATCAGCAACGGTAACTTAT
AACAGTGGTTGCATGGTGCGATGCGTCAACAAGGTGTTCTTACCTGGGAAGCCCGCATAA
AAATTACCCTTGGCATTGCTAAAGCACTGGCTTATTTGCATGAAGGCATAGAGCCGAAAG
TTATTCACCGTGATATCAAATCAAGTAATATCCTTATCGACGAAGAATTCAATGGAAAAC
TTTCTGACTTTGGATTATCTAAGCTCTTGGGCGAAGGGAAAAGCCATATAACTACTCGAG
TTATGGGGACTTTTGGCTATGTAGCCCCTGAATACATAAATACTGGACTGCTAAATGAAA
A

Homology of Contig U35_45239 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g35450.1	510	8e-85	protein\|serine/threonine-protein kinase, putative, expressed
Brachypodium v1_2	Bradi2g42740.4	482	2e-91
Arabidopsis v10	AT1G56720.1	492	3e-79	Protein kinase superfamily protein \| chr1:21263630-21265559 REVERSE LENGTH=492