barSeed - Barley Seed Development Database

Probe CUST_27213_PI390587928

Source Contig U35_21280

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27213_PI390587928	Hv_44K_v2	GTGGGAGAAAAGACTACGTGTGGTCTTGTCAAGGAATGCTAATTATCTAACCTCCATTCA	1104	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK364278	3595	2e-24	2825 - 2884	100	60 / 60	plus	ABC16423
MLOC	MLOC_500.2	645	2e-24	242 - 301	100	60 / 60	plus	ABC16423
MLOC	MLOC_500.1	1780	2e-24	1377 - 1436	100	60 / 60	plus	ABC16423
JLOC1	JLOC1_304.1	1403	8e-25	420 - 479	100	60 / 60	plus
Harvest21	ABC15700	584	8e-21	533 - 584	100	52 / 52	plus
Harvest35	U35_21280	1164	3e-25	1105 - 1164	100	60 / 60	plus

Contig Sequence (1164 bp)

>U35_21280 1164 Hv_44K_v2
GGCAGTTGAGGATTCAAATTTGATGGTTAAACTAAAATTCCTGACCTATAAGATAAGAAC
ATTTTTAATTCGAAATGGCCTATCCACCCTCTTCAAAGATGGCCCATCTGCGTATAGAAC
TTATTACCTGAGGCAAATGAAGATTTGGGGAACATCAGCAAGTAAGCAGAAAGAGCTTAC
CAAAATGTTGGATGAATGGGCTGTATACATCAGAAGAAAGTATGAAAACAAGCAGCTGCT
ATCCTCAACATATCTTAGCGAAGCAGAACCTTTCCTTGAACAATATGCTAAGCGTAGTCC
TGCAAACCAGGCTTTGATAGGGGCTGCTGGTGATTTGGTTCAAACAGAAAATTTCTTGGC
CATACTTGATGCACAGAGAGATGAAGAGGGTGACCTTCAGCCAGAACGTGGGACAGCTCC
TTCTAGTCCTACATCGACATCCCTGGATGTTGTTTCGAAAACTGAGGGCCTTATTGTCTT
CTTTCCTGGTATACCTGGTTGTGCGAAGTCTGCTTTATGTGAGCAAATATTAAGCACACC
CGGTGGGCTTGGTGATAATCGTCCTCTTCACAGTTTGATGGGAGATCGTACTAAAGGAAG
ATACTGGCAAAAGGTTGCTGATGAGCGAAAAAAGAAACCATTTAGAATAACCCTCGCTGA
CAAAAATGCACCAAATGAGGAAGTCTGGCGGCAGATTGAGGATATGTGTGGGACGACAAA
GGCTGCTGCTGTTCCTGTTATTCCTGATTCTGAAGGCACCGATTCAAATCCATTCTCTCT
TGAAGCTCTTGCGGTTTTCATGTTTCGTGTACTCCAGCGGGTCAATCATCCGGGAAATCT
GGACAAAGCATCACCAAATGCTGGCTATATCGTGCTAATGTTTTACAACCTCTATGATGG
CAAGTGTCGAAGAGAATTTGAAAGTGAATTGTATGAGCGTTTTGGCTCTTTGGTTAAGAT
GCCTCTCCTGAAGCCAGAGAGAGCTCCATTGCCTGGTGATGTCAAAACTATCTTAAACGA
GGGAATGAGCTTATTCAGACTGCATCAAAGCATGCATGGGAGAGCGGAGCCATCAAAAGG
TTCATATGCTCAAGAATGGGCTCAGTGGGAGAAAAGACTACGTGTGGTCTTGTCAAGGAA
TGCTAATTATCTAACCTCCATTCA

Homology of Contig U35_21280 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os07g09400.1	1163	protein\|RNA ligase isoform 1, putative, expressed
Brachypodium v1_2	Bradi1g54807.1	1136
Arabidopsis v10	AT1G07910.1	1104	\| Symbols: ATRNL, RNL, AtRLG1 \| RNAligase \| chr1:2446712-2454386 FORWARD LENGTH=1104