barSeed - Barley Seed Development Database

Probe CUST_27209_PI390587928

Source Contig U35_21284

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27209_PI390587928	Hv_44K_v2	TGTCTCTGTTCTGCTAACTTATGCGAGTCCGGTAGAGACCACGCAAGATTAAAGAAAAAA	903	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.330	1.877	1.087	0.760	0.351	0.368
Raw	2856.217	3669.565	1838.487	2053.018	328.129	372.313

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK360140	1499	2e-24	1427 - 1486	100	60 / 60	plus	ABC17819
MLOC	AK377083	1675	2e-24	1393 - 1452	100	60 / 60	plus	ABC17819
MLOC	MLOC_56817.2	972	2e-24	894 - 953	100	60 / 60	plus	ABC17819
JLOC1	JLOC1_36784.1	1137	8e-25	876 - 935	100	60 / 60	plus
Harvest21	ABC17819	965	1e-23	904 - 963	98	59 / 60	plus	ABC17819
Harvest35	U35_21284	995	3e-25	904 - 963	100	60 / 60	plus

Contig Sequence (995 bp)

>U35_21284 995 Hv_44K_v2
GGGCACCAAATAGCTGCTTCTCACTTGCAAGAAAATGACCTTGTCTATGTGTCTGGGCAA
TTAACTGGAGATGTTCCGCCATTCAAACATACTGATGGCCAAGCAAATATTCAGGTTTTA
GCACATTTGCTGTCATTTGTTGATAGTAAAGCTGTGGAAACGGATCTCATGGTGGATGAA
GACGAAGGGTTTATGGAGATTGCTGAGGCCGAAAAGAAAGTTGAACAAACCAAACCTATC
TCTAAATATCCAGCAAACACATTTTCAGGTTACAAAGCCAAACTGGACAAGTTCAGAACA
CTCTGGAATGATGTTCTTGCCAATCCACTCAATTGGACTGATAACCGGGCTGAGAAGGCG
AATGGATCTAAAAATCCAAAGTATCCTGATTTTAAGAACAAGACATCAGATGAGGCACTC
TGGCTTGGCTCAGCACCACCGCATGTGGTAGAGAAGTTGGATGGTTTGACCTTTAGTAGT
GGCTACAATGCGGCTAAAACGGCTACAACATATAAGCCTTTTGATTCTAGCATGGGGAGA
GGTACGAATACAGGTTGGAGTAAATTCAAGCCAAGCCAAGCTGCTTCTCCCGAGAAACAA
AAAAAGGAAGCGGAATCGTGGCAGAATCTGGTGGAAAGTCCACAAAGCTGGTGGGACAAC
CGAGTAGACAAGAGGTCACCTAAAGCCCCCGACTTCAAGCACAAAGACACCGGCGAGGCT
CTATGGTTGAGTCCCAGGACACCAAGTTGGGTTACAGATGCGCTGCCGCCGGTGAAAGGA
GGTAGCAAAGGGGGAGGGGCAGGTAGAAGGCCGGAGACCCTACTCTCTTGACCTGTCTGA
GGTGGCCTACGCTGTGCGATGTGCGTTGCCTCAGCTCTATTCTTTTGCTAAATATATTCA
GGCTGTCTCTGTTCTGCTAACTTATGCGAGTCCGGTAGAGACCACGCAAGATTAAAGAAA
AAAAAAATCTCTGCCTTAAAAAAAAAAAAAAAAAA

Homology of Contig U35_21284 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g72049.2	310	8e-104	protein\|retrotransposon, putative, centromere-specific, expressed
Brachypodium v1_2	Bradi2g60720.1	401	1e-107
Arabidopsis v10	None