barSeed - Barley Seed Development Database

Probe CUST_27208_PI390587928

Source Contig U35_21285

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27208_PI390587928	Hv_44K_v2	ATGCCCAATCTGAACGTCGAGACCCTGAAAAGTTTTTGACGATAATTTTTCATCAAAAAA	823	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.439	1.417	1.059	0.945	0.485	0.592
Raw	458.539	705.809	468.512	662.778	119.025	155.521

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_21285	894	3e-25	824 - 883	100	60 / 60	plus

Contig Sequence (894 bp)

>U35_21285 894 Hv_44K_v2
GACGAGGCTACAACAGTACAGACTGTTATATATCTGGAAGGCGAAATTTTAGGGCGGTGC
CTGATTTCAGAATGGCAGTCAGTTATATAAGAGAGAAGATTCCTAGGTTTGCCATGACAG
ACAAGATATGGTGGCAAGGGCTTGCTCGTATTTTAGAGGACATGGGATACATACAGGAAG
TAGCTGAAACTCCTCGTGTTCTAATCCAGCATCCAGAGCCAACAAGAGCTGGAGTAAATT
TTTTGAGTTCACAACCAGACGAGGAAGGCTTATACGCATACCCTGATGCCGCTACTTTAC
TGGCGATTAGTAACCCAAAGTCCTTCTCTTCTTCCTCGGAGTGGGGCAGGGGGTGGGCAG
ATCCTGAGATACGCCGCCAGCGTCTTGCGGGCAAAATGGGAAAAAGGAAAAGAAAGAGGG
GCTCTCGGAAGCAGACCGCAGGTTTTACCACTGCAAAAGAGAGACTATCAGCAATACTCT
CGAAATCGAAATGCAGAAGGTAACACGAGGAGTGATGAGATCATGAGATGGCAAAACTAT
TCATTGGAGCTTGAAAAATGAAAAAGATCACATTGAGTGAAGTTCAATTCGGAAGCGGGT
TTTTTCCTAGGCAGGCACAGGTTGGTAAATCTGACATACTTGTTTGGAGATCAGTTGGGA
TTTTTTACTTACTTGGAGATTGCCTACTAATCAGTTGATTTCACAAGTTTACTGCCTAGT
GTTAGTTTTAAATGTTACAAATTTTGCATGGCTTATCATTAGTGTAACTATTCACTATTG
TAATACAAATGAATGAAGTTACAGATCACTATTTTGGCAGCCCATGCCCAATCTGAACGT
CGAGACCCTGAAAAGTTTTTGACGATAATTTTTCATCAAAAAAAAAAAAAAAAA

Homology of Contig U35_21285 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g05810.2	845	3e-53	protein\|DEAD-box ATP-dependent RNA helicase, putative, expressed
Brachypodium v1_2	Bradi2g35707.1	866	5e-71
Arabidopsis v10	None