barSeed - Barley Seed Development Database

Probe CUST_27207_PI390587928

Source Contig U35_21286

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27207_PI390587928	Hv_44K_v2	TCTGTTTTCCTGAACACCAAAATGTAGCGACTGTACCTAATTTGTTGGTTTGTTTGTATA	488	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.698	1.786	1.046	0.644	0.302	0.180
Raw	58.216	94.784	49.380	46.523	6.891	3.740

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_20169.1	571	2e-24	222 - 281	100	60 / 60	plus	ABC18435 ABC18436
JLOC1	JLOC1_13989.1	425	8e-25	240 - 299	100	60 / 60	plus
Harvest21	ABC18435	633	3e-25	489 - 548	100	60 / 60	plus	ABC18435
Harvest21	ABC18436	498	5e-23	55 - 113	98	59 / 60	minus	ABC18436
Harvest35	U35_21286	634	3e-25	489 - 548	100	60 / 60	plus

Contig Sequence (634 bp)

>U35_21286 634 Hv_44K_v2
GATGATTTGTTCAGAGGGTTTGAGACCATTATTCAAGAATAAATCCAAATCATATCCTGA
GGGCGTGAAAGAGCTAATACAAGAGTGCTGGGATCCAACACCTTCTGGCAGGCCAACGTT
CTCAGATATAATTGTACGCCTGAACAAGATATCTGCAAGTTGTTCCAAGCAAACTCGCTG
GAGAGACAACTTCAAGCTACCATGGAAACAAGCTGTGCACAAATAGTTCTGATCTTCCAC
GAGACTGTCATGCCCCCCCCCCCCCCCTGCATATGTTAGTAAACACGGTGAAAACTATAT
TGGTATACGGGACAGAAGTTGTTCCTTTACAAGGTTTTTGTATGTCCAGTTATAATTCCT
TTGTTTTTATACCTCTGGTTAAGTGTATTTCGAGTTACATTCATTCAAATGGGAAGAATG
TACTAAGTTCCTGAAGGTTGCAAATATGCTCATACCGTATGCCCCCGAAAGTCCAAACGA
TATATTTTTCTGTTTTCCTGAACACCAAAATGTAGCGACTGTACCTAATTTGTTGGTTTG
TTTGTATAAAATGTTGCAAAAGTTCAGGTATTCTTTCTTCAGATGTTGGAAGAAAAAAAA
AACCTGTTTGTTTGCACAAAAAAAAAAAAAAAAA

Homology of Contig U35_21286 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None