- Probe CUST_27202_PI390587928
- Source Contig U35_33261
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_27202_PI390587928 | Hv_44K_v2 | GAAATAGGCTTTCGCCTGCTTTATAGATAAAGCAAACAGATGCAAGCGTGGGTGTCATGA | 27 | GeneList: blue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.890 | 1.421 | 1.428 | 0.805 | 0.269 | 0.204 |
| Raw | 100.631 | 122.142 | 105.116 | 91.102 | 10.651 | 9.134 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| Harvest35 | U35_33261 | 424 | 3e-25 | 28 - 87 | 100 | 60 / 60 | minus | |
| Harvest35 | U35_13675 | 1763 | 2e-21 | 80 - 132 | 100 | 53 / 53 | minus |
Contig Sequence (424 bp)
>U35_33261 424 Hv_44K_v2 CCCTCCAGAGCATGCTCGAGCGGCCGCTCATGACACCCACGCTTGCATCTGTTTGCTTTA TCTATAAAGCAGGCGAAAGCCTATTTCGTGAACAGGATATAAGTTTCAATTCTCTGGCCC CAGGTGCAATGCATGGCATGATTTCAGAAATGAAAAGAATGCAGTTAAGTGTAACAAAAT TAACAGCCGAGGCCAGGGGAAAGACAGTGCCTTTGTGCAGGGTAGAGCGCGGCGGCATCT TCCAGCTATTTCACAGCCACGGCGCTGTCTGTCCCAGCTCCTCTATAAGCTTCCAGTACT TCAGGGATCGTTTGCTGGTAACCAGTGACATACTTCTCCATGAACTTCTTCTCCCCCAGT ATCAAGTGGCTTATTCGGATGCGTCTGATGACACCCCTTGACACCAATATGTCTAGCACC CGGT
Homology of Contig U35_33261 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |