- Probe CUST_271_PI415269222
- Source Contig TA54874_4513
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_271_PI415269222 | Hv_44K_v2 | TAGTCGAGGATCTTAGATGGATTTGCCACACGTATATTTATTTGGATTTGGATTTGGATT | 354 | GeneList: paleturquoise MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 4.549 | 2.512 | 0.573 | 0.467 | 1.070 | 0.953 |
| Raw | 28.081 | 24.303 | 2.775 | 3.623 | 3.269 | 3.292 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| JLOC1 | JLOC1_39775.1 | 2013 | 8e-25 | 1900 - 1959 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC26387 | 437 | 3e-25 | 361 - 420 | 100 | 60 / 60 | plus | ABC26387 |
| Harvest35 | U35_12129 | 437 | 3e-25 | 361 - 420 | 100 | 60 / 60 | plus |
Contig Sequence (414 bp)
>TA54874_4513 414 Hv_44K_v2 GACGGGATCATGCTCTGGACCGCCATGGNACGCCAACGCCACCTGCTACCAGATGTGCCT CACCGACGGCAACTTCACCAACCTGCCCGCCGGGGACGTCGTGGACCGGCTGCTCGGGGA GTGGCAGACCAGGGAGGTGCTCGGCGCCACCAACGACCGCGGCTCCTTCAACTTCAGCGC ATTCCTCGGGGAGTACAAGCTGTCCGTCACCTACCTCAACTCCTCCGCCGAGGGCACCTT CTCCCTCGCCCGCAGCGACGACACCAAGCACATCACCATCCGTCTCCAGCCATGATTTGA TTGATTTATACTCCCATGCATGCATCCAGTTGAAAACCATGCATGGTTAACTAATAGTCG AGGATCTTAGATGGATTTGCCACACGTATATTTATTTGGATTTGGATTTGGATT
Homology of Contig TA54874_4513 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |