barSeed - Barley Seed Development Database

Probe CUST_271_PI390587928

Source Contig U35_20064

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_271_PI390587928	Hv_44K_v2	TGTCTGATGTGAATACCAAGCACACAGCGCTTGCTGTTGCTAGTGTGACATTTTGTTTCG	1484	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.395	1.578	1.112	0.868	0.301	0.342
Raw	1663.723	2996.575	1810.757	2312.252	268.360	336.079

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK366392	1658	2e-24	1597 - 1656	100	60 / 60	plus	ABC12792
MLOC	MLOC_13209.1	1782	2e-24	1696 - 1755	100	60 / 60	plus	ABC12792
JLOC1	JLOC1_8919.1	1840	8e-25	1622 - 1681	100	60 / 60	plus
Harvest21	ABC12792	1569	3e-25	1485 - 1544	100	60 / 60	plus	ABC12792
Harvest35	U35_20064	1569	3e-25	1485 - 1544	100	60 / 60	plus

Contig Sequence (1569 bp)

>U35_20064 1569 Hv_44K_v2
ATACATACCCAGAGGCAGAGGCTACAGCAGCCCCTCGCAGGGAAAAGAAGACCCACCCAG
AGGCAGAGGCCCGCCTCAAATGCGCCGCCGGCCGCGCGCCGCCGCACGATGAGCCCCGCC
GCGACGGACGCCGGCGGCGACCTCTTCGCCGCCAACCTCAAGGGCGCGCTCCTCGCCGTC
GCCTCCTCCGCCTTCGTCGGCGTCAGCTTCATCGTCAAGAAGAAGGGCCTCCGCCGCGCC
GGCGCCGTCGGCTCCCGGGCAGGCGTCGGAGGGTATGGGTACCTCTGGGAGCCGCTCTGG
TGGGTCGGGATGGTCACCATGCTTGTTGGGGAGACCGCCAATTTCGTGGCTTACATGTTT
GCGCCAGCCGTCCTCGTCGCGCCGCTCGGCGCACTCAGCATCATTGTCAGTGCTGTTCTA
GCCCATTTCATGCTGAATGAGAAGTTGCAGCGGGTGGGCGTCCTGGGCTGTATTCTCTGC
ATTGTTGGGTCGACGGTGATCATCCTCCACGCTCCGGAGGAGAGGCCCCCGAACTCGGTG
GAGCAGATTTGGCGCTTGGCAACACAACCTACCTTCCTTTGCTATGCTGCTTTAGCAGTA
GCTGTGTCATTGCTTCTTATGCTATATTGTGCTCCACGGTATGGGCAGGCGAACATAATG
ATCTATGTTGGTATCTGCTCGGTTATCGGATCCCTCACGGTAATGAGCATCAAGGCTGTG
GGCATTGCAATTAAACTTACCATTCAGGGCGAAAACCAGGCTGGGTATTTCCAGACGTGG
TTATTTGTGATGGTTTCAGCTATATGCTTAGTCATCCAGTTAGTTTACCTAAACAAGGCA
CTGGATACTTTCAACACAGCGCTGGTTTCTCCCATCTATTATGCCATGTTCACAACCCTC
ACTATTTTAGCAAGTGCCATAATGTTCAAGGATTGGTCTGGGCAGAGCGCAAGCATTATT
GCCTCCGAGACTTGTGGGTTTCTCACAGTTCTTGCCGGTATTATTGTGCTCCATTCCACT
AGAGAACCTGATCAAAATCTGTCTCCAGACCTTTATGCATCTCTCACTGCACCCCTGCCT
CCAAAGATATACTGGCACATACAAGGAAACGGCGGCGATGTAGGGAAGCAAAAAGAGGAA
GACTCACTTCCCTGCGATTTCATCACCGTCGTGCGCCAAGACTACTTCGTCTAGAAAACT
CTCAGGACGGCATACACGTTTCATGTGCCGGCCAGCCTCAAGACCTTCATGTGGAGAGGG
TGGACACCGGGGCCAGTTACCGACGGTAATGACGCCCTCAAGGCCATCCTGGCCTGAAAA
ATGTTAAAATTTTGCAGAGAGATCGTGTTGTACCATACCATGACCAAACCGGTTGGGTCG
AACCTAGATGAGATGTTGTACGATTACTAGTGGACTGTAGAAACTGTGCCGTGTAAGGAT
GATGTTGTAGGGGGTTCGTGAGGGATGTTGTAGATGTTGTTGCCTGTCTGATGTGAATAC
CAAGCACACAGCGCTTGCTGTTGCTAGTGTGACATTTTGTTTCGCCCAANNNAAAAAAAA
AAAAAAAAA

Homology of Contig U35_20064 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g65310.1	364	0.0	protein\|DUF803 domain containing, putative, expressed
Brachypodium v1_2	Bradi2g56480.1	360	0.0
Arabidopsis v10	AT2G21120.1	328	3e-120	Protein of unknown function (DUF803) \| chr2:9052103-9054266 REVERSE LENGTH=328