barSeed - Barley Seed Development Database

Probe CUST_27192_PI390587928

Source Contig U35_45248

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27192_PI390587928	Hv_44K_v2	TTCTATAGAGGAACAACATCAATGGAACTTGTGCAAGGAGTTCCTCCTACAGCAGTGCAC	230	GeneList: black MasterList: Hordein_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.081	0.068	0.235	2.388	5.768	9.789
Raw	2.918	2.888	20.689	309.477	274.720	514.127

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK251750.1	1148	7e-23	511 - 570	98	59 / 60	plus	ABC00209 ABC28950 ABC32362
MLOC	MLOC_66711.1	2132	7e-23	1466 - 1525	98	59 / 60	minus	ABC00209 ABC28950 ABC32362
JLOC1	JLOC1_43995.1	1222	4e-23	597 - 656	98	59 / 60	minus
Harvest21	ABC00533	897	1e-23	234 - 293	98	59 / 60	plus
Harvest21	ABC00521	1081	1e-23	459 - 518	98	59 / 60	plus
Harvest21	ABC00209	1153	1e-23	497 - 556	98	59 / 60	plus	ABC00209
Harvest21	ABC33103	460	5e-23	96 - 155	97	58 / 60	plus
Harvest21	ABC45155	295	6e-22	175 - 234	97	58 / 60	plus
Harvest35	U35_45248	381	3e-25	231 - 290	100	60 / 60	plus
Harvest35	U35_67	1153	1e-23	497 - 556	98	59 / 60	plus

Contig Sequence (381 bp)

>U35_45248 381 Hv_44K_v2
CCAAGCGGCCTTGAACTAGAAAGGCCACAACAATTATTTCCACGATGGCAACCACTTCCC
CATCAACATCAATTTCCACAGCAGTTGCCGCAACAACAATTTCCGCAGCAGATGCCACTC
CAGCCGCAACAACAACCACAATTCCCGCAACAAAAACCATTTGGCCAATATCAACAACCA
TTAACACAACAACCATATCCGCAACAGCAACCATTGGCACAACACCAACCTTCTATAGAG
GAACAACATCAATGGAACTTGTGCAAGGAGTTCCTCCTACAGCAGTGCACCCTGGACGAG
AAGGTACCATTACTCCAGTCAGGGATCTCGTTCCTCCGACCACATATCTCGCAACAAAAC
AGTTGCCATTGGAAGCGACAA

Homology of Contig U35_45248 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None