barSeed - Barley Seed Development Database

Probe CUST_27191_PI390587928

Source Contig U35_21290

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27191_PI390587928	Hv_44K_v2	TAAAGGGCTGCAGTTCAACTGATAGGAGGAGTTCACTTTTGAATGATTGGGATCTTCAAG	1128	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_52291.1	1496	2e-24	280 - 339	100	60 / 60	plus	ABC17498
MLOC	AK369948	2664	7e-23	1551 - 1610	98	59 / 60	plus	ABC17498
JLOC1	JLOC1_33495.1	1503	8e-25	299 - 358	100	60 / 60	plus
Harvest21	ABC14676	1186	4e-24	1129 - 1186	100	58 / 58	plus
Harvest35	U35_21290	1188	3e-25	1129 - 1188	100	60 / 60	plus

Contig Sequence (1188 bp)

>U35_21290 1188 Hv_44K_v2
TTAAGAGTTACCAGGAGGAAGTGGATAATCTCACCAAGAGAGCAAAGTTTGGGGAAAATG
CATTTCTCAACATCTATCAGAAGCTCTATGAAGCCCCTGATCCATATCCAGCTCTTGCTT
CTATGGCTGATCAAGACCAGAAACTATCTGAACTGGAGACTGAAAATCGGAAGATGAAAC
TTGAGCTTGAAGAATACCGGGCAGAATCTGCCCACCTAAAGAACCAACAGGCGACGATTA
GGCGACTTGAGGAGCGAAACCGCCAACTAGAACAACAGATGGAAGAAAAAGTTAGGGAGA
TGGTTGAAATGAAACAGCGAAGCTTGGCAGAAGATAGTCAGAAAACTCTTGAAGTCCTGA
AAGATAGGGAACGGTCGTTGCAAGACCAACTAAGGCAAGCTACAGAAAGTGTCAAGAATA
TGCAGAAGCTACATGAATCGGCACAAAGCCAATTGTTTGAGCTTCGTACTCAATCAGAGG
AGGACCGGACAGCAAAGGAAGCTGAAGTGAGCCTTCTGATGGATGAAGTTGAACGCGCTC
AATCACGATTAGTTAGCCTTGAAAGAGAAAAGGGGGATTTACGGTCTCAGTTGCAGACAA
CAAATGAAGACACAAGCAATAACAGTGATTACATGGACCCAAGTGATATACTTGAGAGTT
CTTTGATTGCCAAGGAGAAGATTATATCAGAGTTGAATGCAGAACTGCGTAACGTTGAAA
GTACTTTATCAAGTGAGAAAGAAATGCATGTGAATGAACTAAAGAAGTTGACTGCTTTAC
TCAGTGAGAAGGAAACTGTGATAACAGAGTTGAAGAAAGAGCTTCAAGAAAGACCTACAG
CTAGACTAGTTGATGATCTCAAGAAAAAGGTTCAGATTTTGCAGGCTGTTGGGTACAACT
CAATTGAAGCTGAAGACTGGGAGCTAGCAACCAATGGTGAAGAAATGAGCAAGCTGGAAG
CTTTGCTTCTTGACAAGAACCGCAAAATGGAGCATGAACTAACACAGTTGAAGGTTAAAA
TATCAGAGAAGTCAAGTCTTCTTGAGGAAGCTGAAAAAAAGATCGCTGAACTAACTTCAA
AGGTTGAAGAGCAGAAAAAATTGATTCTGAAACTTGAGGATGACATACTAAAGGGCTGCA
GTTCAACTGATAGGAGGAGTTCACTTTTGAATGATTGGGATCTTCAAG

Homology of Contig U35_21290 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g50300.1	669	0.0	protein\|CASP, putative, expressed
Brachypodium v1_2	Bradi1g11300.1	698	0.0
Arabidopsis v10	AT3G18480.1	689	3e-157	\| Symbols: AtCASP, CASP \| CCAAT-displacement protein alternatively spliced product \| chr3:6336924-6341596 FORWARD LENGTH=689