barSeed - Barley Seed Development Database

Probe CUST_27185_PI390587928

Source Contig U35_21296

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27185_PI390587928	Hv_44K_v2	CACACTCCAGCCTAATGAGAAAAAGGCCAGCAAGCAGAAGATGAGTTTGGAGATTCCTTT	1197	GeneList: skyblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.833	0.855	1.712	1.210	1.228	0.967
Raw	4.331	6.500	14.937	15.434	4.863	3.154

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK248260.1	3002	2e-24	1327 - 1386	100	60 / 60	plus	ABC10039
MLOC	MLOC_55241.3	1124	2e-24	142 - 201	100	60 / 60	plus	ABC10039
MLOC	MLOC_55241.1	1305	2e-24	219 - 278	100	60 / 60	plus	ABC10039
MLOC	MLOC_55241.2	1904	2e-24	219 - 278	100	60 / 60	plus	ABC10039
JLOC1	JLOC1_35618.1	2100	8e-25	222 - 281	100	60 / 60	plus
Harvest21	ABC14881	1271	3e-25	1206 - 1265	100	60 / 60	plus
Harvest35	U35_21296	1263	3e-25	1198 - 1257	100	60 / 60	plus

Contig Sequence (1263 bp)

>U35_21296 1263 Hv_44K_v2
CCATCGTCGACACCTGTCGGCCTCCTCCCCGCCGGGTTTCCTTAGCCGGTGCGGCCCCCT
CTTCTGCTGCCGTGGCCTCCGGGGACTTCCCGTGTCCCGAAAGAGCCCTCCTTTGAACGC
GGTGGAGCTGTTGGGGGCAGCAGGGGAGAGGAGGAGGAGAGCCGTGCGCGCTCGGGACAG
GGGCAGGAGTCCCGGGGCCGTACGGGGAGGGAGCAGCCAGCGTGCGTACGTCCATCCATC
CGCGGGCCACCGCCGCGGGTACAGGGTGTCAGCCCGGGCGTCCACCGGCCGGCCGGGCCC
TTTTCTTTCTGGTGCGGGCCTTCAATGCGTCGTCCTGGCCGCTGATATCCATCCATCATC
ATCCAACCCTCCCCCCGGCCTCCTCGGCCGATCAGATTCGGTTCCGTTAGCTCGAGCTCG
CGCCGGAAAGAGGGGAAGAGATATATACAGATAGATAGATAGATAAATAGAGAGAAGAGG
GTTGGACGAGGCAGGCATTCTGATCCGGATTCCGCTCCCGCAACCTCCCGCCCGCACCGA
GGAAGGATTCTTCAGCAAGTTTCAGGGATCTGTTTGATACTGAGCAGACCCTTGACCTCT
TTGTGCATCACACCCATCTTCTGTACAACTTGCGGCAAGAATTTGGCAGCAAATGGGTCG
AGGAATCGCTGCGATTCCTGGCCTAAGGTCTCTCGGAGGCGTTTCCTGTGACTTTTGTTC
CAAATTTCACTTCAACATGTGGTTCATGCTAGTCCAAGCTTCCAAAGTTGGAATCTGATC
ACCTGTGACAGCGTTTCTTCGTCTCCTTAGTTCCAGCAGTATGGACAAGGAGACCTCCTG
GGTTAGGAGGACTAAGTTTTCGCACACCGTCTACACAAGGGTTGGTTCCCATGGGGTGCA
TGTGGATCCTCTTGGCAGGGATGTGGAGCAGAGGCTTCAAAGGTTTGTGAGTGTGGCTCC
TCTTGGCAGGGATGTGGAGCAGAGACTTCAGAGGTTTGTGAGTGTGGCTCCTCTTGGCAG
GGATGTGGAGCAGAGACTTCAGAGGTTTGTGAGTGTGGCTCCTCTTGGCAGGGATGTGGA
GCACAGACTTCAGAGGTTTGTGAGCATGGGTAAGTGTGTGACGATGCCCATTGATCGAGA
CAATGATAAAACAGTGGCTGCGCTGAAGCATACTGCTAGTTTACCATCACTCCGATCCAC
ACTCCAGCCTAATGAGAAAAAGGCCAGCAAGCAGAAGATGAGTTTGGAGATTCCTTTGAG
CCC

Homology of Contig U35_21296 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None