barSeed - Barley Seed Development Database

Probe CUST_27182_PI390587928

Source Contig U35_21299

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27182_PI390587928	Hv_44K_v2	TGTATCCTGCTGTGAATCAAGGTAATCTCTTTTTTGCCTAATATTAATGTTAGAGCATGC	621	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK250781.1	1726	2e-24	1648 - 1707	100	60 / 60	plus	ABC16599
MLOC	MLOC_74537.2	1832	2e-24	1773 - 1832	100	60 / 60	plus	ABC16599
Harvest21	ABC16599	693	3e-25	13 - 72	100	60 / 60	minus	ABC16599
Harvest35	U35_21299	693	3e-25	622 - 681	100	60 / 60	plus

Contig Sequence (693 bp)

>U35_21299 693 Hv_44K_v2
GCTGCTTCTGCTGTAAACGATGACAACCAGGCGATTGGTAGACCGTGGAAGAGAAGTAAA
AAACGGAGAGTGTCATTTAGAGATCAGGTTGGTGGAGAGCTTATTCAGGTGGTTGGGATT
TCTGATGGAGCAGATGTTGAAACTGAACCAGGCCCGGTAGGTGTGAAGGAAGGCAGTCTT
GTTGGGAAGTACGAGTCTCTTGTACAGGTTACTGTCATACCAAAAGGCAAGGAGCAAACT
TCACAAAAGGACAGTAGTGCCTCCCACAGTACCGGGGTAACAGATAAGCTGCAACAGATG
CTTGACAAAGTAAAAAGCACAACAAGAGGCGGTATGTATGATGACCTTTACGGAGATTCT
GTTCCGGCAAAACTGGGCTCATCATGGGCGTATAAATCAGATGGCCAGCCAGAGCAAGTC
AAAGTTGTTGATGAAAAGAAGTCTAGCAAGGCAAATTCAGCTGATGATAGTGATGATGAC
TTGTTTGGCGACTAGTTATTTTGTCACATTTCCTTCCAGTTAGTAGTGAATTGCCTTGAT
GATTCCAAACGCATGGCATGGCAGCAGAAATGTTATTTTTTGTCTTGGGTATTGTGCTTT
TTGTTCTGCTACATGATTGGTTGTATCCTGCTGTGAATCAAGGTAATCTCTTTTTTGCCT
AATATTAATGTTAGAGCATGCTTTCTTTCTAAA

Homology of Contig U35_21299 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g23680.1	422	8e-67	protein\|FHA domain containing protein, putative, expressed
Brachypodium v1_2	Bradi3g20620.1	423	7e-70
Arabidopsis v10	None