barSeed - Barley Seed Development Database

Probe CUST_27181_PI390587928

Source Contig U35_33270

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27181_PI390587928	Hv_44K_v2	TGAGCAGAGCGAAAAACGCAAGCAAGGAATTGCATGTGAAATTGATGGTTATGTTTTATA	0	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.846	4.076	1.427	0.740	0.241	0.463
Raw	177.206	396.621	119.358	102.785	10.707	23.530

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction
JLOC1	JLOC1_41792.1	3725	8e-25	3595 - 3654	100	60 / 60	plus
Harvest35	U35_33270	587	3e-25	1 - 60	100	60 / 60	minus
Harvest35	U35_17272	742	3e-25	678 - 737	100	60 / 60	plus

Contig Sequence (587 bp)

>U35_33270 587 Hv_44K_v2
TATAAAACATAACCATCAATTTCACATGCAATTCCTTGCTTGCGTTTTTCGCTCTGCTCA
TTTATAAGGTGTATATATGTACAACAGGCCTGAGGGAGGCATGCTAAGACATAAAGGAAT
TATTAGCGACATGTTTGCTCATGCTTGCACATCCATAAGAAATTATACCTTGCATTGTAT
GCAAATTCTGCAGTCATCATCCAGCCAAAATCACAGGCCGGGATTACGTAGTACGAGCCG
TGCTCTTCACATGGCCTTGAGAAGTTCGGAGAGAGCCTGGCCTTCAGCGAGCGTGGCGAT
GTTCGGGGAGTCCATGGCCACGACGTCCTGCAGCGGCCGCTAGACATAAGCGAGGTGAGG
ATAGAAGGCTTGGAAACCCTCGATTATCTGGACAATCTCCGCCATCGTCTTCGCCTTCTT
CTCCCACGGGTTCCACACCACGGTGTCAGGGAGGCCATCCTTCCTGATGACGAAGGTGCG
CTTCTTCTCATGGTCGAGCACCGCTATCACGTTTGGCGAGCTGACATACACTCGGTCTAC
CTCTGATTCGAATGTTATGGCGTCTCCTTGTTCAGTATGGCGTTCCC

Homology of Contig U35_33270 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None