- Probe CUST_27176_PI390587928
- Source Contig U35_45250
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_27176_PI390587928 | Hv_44K_v2 | TAAACCCTATGTTATTAATCTGATGGACGAACTTACATTGAAGGGAATTACCCAGTTCTA | 99 | GeneList: lightyellow MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.371 | 0.649 | 1.120 | 1.537 | 1.116 | 0.990 |
| Raw | 3.960 | 13.324 | 21.042 | 43.198 | 11.288 | 11.144 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK363720 | 2298 | 7e-23 | 1090 - 1149 | 98 | 59 / 60 | plus | ABC10644 ABC10645 |
| MLOC | AK357829 | 2185 | 7e-23 | 1043 - 1102 | 98 | 59 / 60 | plus | ABC10644 ABC10645 |
| MLOC | MLOC_54847.1 | 1770 | 7e-23 | 368 - 427 | 98 | 59 / 60 | minus | ABC10644 ABC10645 |
| JLOC1 | JLOC1_35326.2 | 1715 | 4e-23 | 1168 - 1227 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_35326.1 | 1702 | 4e-23 | 1155 - 1214 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC43876 | 159 | 3e-25 | 100 - 159 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC10644 | 1418 | 1e-23 | 321 - 380 | 98 | 59 / 60 | plus | ABC10644 |
| Harvest35 | U35_45250 | 159 | 3e-25 | 100 - 159 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_19938 | 1585 | 1e-23 | 321 - 380 | 98 | 59 / 60 | plus |
Contig Sequence (159 bp)
>U35_45250 159 Hv_44K_v2 GGAGCAGAAAATTCGATACCTTCCATCGAATCTACAGATTCTAATGTTCTCTGCAACAGT CCCGGACACTGTCAAGGCTCACAATGACAAATATGTGCCTAAACCCTATGTTATTAATCT GATGGACGAACTTACATTGAAGGGAATTACCCAGTTCTA
Homology of Contig U35_45250 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |